YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349388, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349388, gi|....

Description	E-value	Query Range	Subject Range
gi\|33601553, gi\|... - gi\|33601553\|ref\|NP_889113.1\| flagellar biosynthetic protein [Bordetella bronchiseptica RB50], gi\|335...	195.0	[0..1]	[254..2]
gi\|33592490, gi\|... - gi\|33592490\|ref\|NP_880134.1\| flagellar biosynthetic protein FliR [Bordetella pertussis Tohama I], gi...	195.0	[0..1]	[254..2]
gi\|73539699, gi\|... - gi\|73539699\|ref\|YP_300066.1\| flagellar biosynthesis protein FliR [Ralstonia eutropha JMP134], gi\|721...	193.0	[0..1]	[255..2]
gi\|15025140, gi\|... - gi\|15895417\|ref\|NP_348766.1\| bifunctional flagellar biosynthesis protein FliR/FlhB [Clostridium acet... gi\|25500687 - pir\|\|G97164 fusion of flagellar biosynthesis proteins FliR and FlhB [imported] - Clostridium acetobu...	192.0	[0..9]	[257..3]
gi\|90411035, gi\|... - gi\|90411035\|ref\|ZP_01219049.1\| flagellar biosynthesis protein [Photobacterium profundum 3TCK], gi\|90...	190.0	[0..1]	[259..1]
gi\|46912553, gi\|... - gi\|54308127\|ref\|YP_129147.1\| flagellar biosynthesis protein FliR [Photobacterium profundum SS9], gi\|...	189.0	[0..1]	[259..1]
gi\|78510291, gi\|... - gi\|78690262\|ref\|ZP_00854911.1\| Flagellar biosynthesis protein FliR [Shewanella sp. MR-7], gi\|7851029...	187.0	[0..1]	[265..1]
gi\|113884321, gi... - gi\|82495251\|ref\|ZP_00880828.1\| Flagellar biosynthesis protein FliR [Shewanella sp. MR-4], gi\|8240675...	187.0	[0..1]	[265..1]
gi\|117919802, gi... - gi\|78686524\|ref\|ZP_00851290.1\| Flagellar biosynthesis protein FliR [Shewanella sp. ANA-3], gi\|785056...	185.0	[0..1]	[265..1]
gi\|90579939, gi\|... - gi\|90579939\|ref\|ZP_01235747.1\| flagellar biosynthesis protein [Vibrio angustum S14], gi\|90438824\|gb\|...	185.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELLLDTLMQ TIASYMWPLF RVASMLMVMV VFGAATTPTR VRLLLAIAIT LAIAPVLPPV  60
   61 KDAQLFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPSSGQ 120
  121 QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFDTLPIS NVGL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTSYRSLAE WGSYMFGAAL TMSLSAIIAL LLVNLSFGVM TRAAPQLNIF SIGFPITMIG  60
   61 GLLILWLTLT PVMAHFDEVW ASAQLLLCDI LGLQCQADGI L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits