YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349387, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349387, gi|....

Description	E-value	Query Range	Subject Range
gi\|205331965, gi... - gi\|205331965\|gb\|EDZ18729.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|168462551, gi... - gi\|195634185\|gb\|EDX52537.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|205342676, gi... - gi\|205342676\|gb\|EDZ29440.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... gi\|194404199, gi... - gi\|194445536\|ref\|YP_002041180.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|161613526, gi... - gi\|161613526\|ref\|YP_001587491.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|205327877, gi... - gi\|205327877\|gb\|EDZ14641.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. enterica... FLHB_SALTY - Flagellar biosynthetic protein FlhB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) ... lcl\|NC_016856.1_... - [gene=flhB] [protein=flagellar biosynthesis protein FlhB] [protein_id=YP_005237881.1] [location=comp... FLHB_SALTY - Flagellar biosynthetic protein flhB OS=Salmonella typhimurium GN=flhB PE=3 SV=1 gi\|194472731, gi... - gi\|194472731\|ref\|ZP_03078715.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ente... gi\|197251527, gi... - gi\|197251527\|ref\|YP_002146107.1\| flagellar biosynthetic protein FlhB [Salmonella enterica subsp. ent... gi\|238912509 - gi\|238912509\|ref\|ZP_04656346.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente...	486.0	[0..1]	[376..1]
gi\|213999608 - gi\|213999608\|ref\|ZP_03410343.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16760863 - gi\|16760863\|ref\|NP_456480.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|213583527 - gi\|213583527\|ref\|ZP_03365353.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|213426385 - gi\|213426385\|ref\|ZP_03359135.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|16503160, gi\|... - gi\|25322221\|pir\|\|AF0745 flagellar biosynthetic protein FlhB [imported] - Salmonella enterica subsp. ... gi\|213163285 - gi\|213163285\|ref\|ZP_03348995.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ente... gi\|29141445, gi\|... - gi\|29141445\|ref\|NP_804787.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	486.0	[0..1]	[376..1]
gi\|197093569, gi... - gi\|197362092\|ref\|YP_002141729.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. ent... gi\|56127423, gi\|... - gi\|56413166\|ref\|YP_150241.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric...	485.0	[0..1]	[376..1]
gi\|62180491, gi\|... - gi\|62180491\|ref\|YP_216908.1\| flagellar biosynthesis protein FlhB [Salmonella enterica subsp. enteric... gi\|224468109, gi... - gi\|224583582\|ref\|YP_002637380.1\| flagellar biosynthesis protein [Salmonella enterica subsp. enterica...	485.0	[0..1]	[376..1]
gi\|77965592, gi\|... - gi\|78064847\|ref\|YP_367616.1\| flagellar biosynthesis protein FlhB [Burkholderia sp. 383], gi\|77965592...	482.0	[0..1]	[375..1]
gi\|91689601, gi\|... - gi\|91785647\|ref\|YP_560853.1\| flagellar biosynthesis protein FlhB [Burkholderia xenovorans LB400], gi...	478.0	[0..1]	[375..1]
gi\|152959095, gi... - gi\|77628864\|ref\|ZP_00791450.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pse...	476.0	[0..1]	[376..1]
gi\|229688933, gi... - gi\|229897892\|ref\|ZP_04513043.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental... gi\|149292674, gi... - gi\|149366261\|ref\|ZP_01888296.1\| flagellar biosynthetic protein FlhB [Yersinia pestis CA88-4125], gi\|... gi\|145598622, gi... - gi\|145598622\|ref\|YP_001162698.1\| flagellar biosynthesis protein FlhB [Yersinia pestis Pestoides F], ... gi\|108779073, gi... - gi\|108807160\|ref\|YP_651076.1\| flagellar biosynthesis protein FlhB [Yersinia pestis Antiqua], gi\|1087... gi\|165913352, gi... - gi\|89104579\|ref\|ZP_01177118.1\| COG1377: Flagellar biosynthesis pathway, component FlhB [Yersinia pes... gi\|167425790, gi... - gi\|167425790\|ref\|ZP_02317543.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Mediaeva... gi\|167401110, gi... - gi\|167401110\|ref\|ZP_02306613.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|186895104, gi... - gi\|186895104\|ref\|YP_001872216.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis PB... gi\|229680323, gi... - gi\|229902876\|ref\|ZP_04517993.1\| flagellar biosynthetic protein FlhB [Yersinia pestis Nepal516], gi\|2... gi\|169751191, gi... - gi\|170024657\|ref\|YP_001721162.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis YP... gi\|25322215 - pir\|\|AD0218 flagellar biosynthetic protein FlhB [imported] - Yersinia pestis (strain CO92) gi\|45441419, gi\|... - gi\|45441419\|ref\|NP_992958.1\| flagellar biosynthesis protein FlhB [Yersinia pestis biovar Microtus st... gi\|21959388, gi\|... - gi\|22126401\|ref\|NP_669824.1\| flagellar biosynthesis protein FlhB [Yersinia pestis KIM], gi\|21959388\|... gi\|16122044, gi\|... - gi\|218928912\|ref\|YP_002346787.1\| flagellar biosynthesis protein FlhB [Yersinia pestis CO92], gi\|1612... gi\|165922150, gi... - gi\|165925946\|ref\|ZP_02221778.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental... gi\|166210428, gi... - gi\|166210428\|ref\|ZP_02236463.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|229896231, gi... - gi\|229896231\|ref\|ZP_04511401.1\| flagellar biosynthetic protein FlhB [Yersinia pestis Pestoides A], g... gi\|166010865, gi... - gi\|166010865\|ref\|ZP_02231763.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Antiqua ... gi\|229693503, gi... - gi\|229897166\|ref\|ZP_04512322.1\| flagellar biosynthetic protein FlhB [Yersinia pestis biovar Oriental...	475.0	[0..1]	[376..1]
gi\|49611156, gi\|... - gi\|50120630\|ref\|YP_049797.1\| flagellar biosynthesis protein FlhB [Pectobacterium atrosepticum SCRI10...	475.0	[0..1]	[376..1]
Q3V7P4\|Q3V7P4_YERPS - Flagellar biosynthetic/export protein FlhB - Yersinia pseudotuberculosis gi\|51596001, gi\|... - gi\|51596001\|ref\|YP_070192.1\| flagellar biosynthesis protein FlhB [Yersinia pseudotuberculosis IP 329...	473.0	[0..1]	[376..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEESSGERS EEPTGRRLDQ AREKGQVARS KELGTATVLL SAATGLYMLG PGIAKALSNV  60
   61 FERVFTMDRA AIFDTNQMFN VWGVVGSEIG WPLLKIMLLI VVVAFIGNVS LGGMNFSTQA 120
  121 MMPKASKMSP IAGFKRMFGV QALVELTKGI AKFSVVAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [159-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASYLLLSHYF NDILLLSADH LPGNVYHALD LLVWMFILLC SSVLVIVVID VPFQIWNHNK  60
   61 QLKMTKQEVK DEYKDTEGKP EVKGRVRQMQ RELAQRRMMA EVPNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [264-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVIVVNPEHY AVAIKYDVKR SAAPFVIAKG VDEVAFKIRE VARAHNIAIV TAPPLARAIY  60
   61 HTTKLDQQVP EGLFTAVAQV LAYVFQLRQY QKGRGRKPIP IPLNQPIPDD LKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.566	0.055	protein secretion	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.668	0.029	protein secretion	a.5.3	N-terminal domain of phosphatidylinositol transfer protein sec14p
View	Download	0.507	0.016	protein secretion	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.688	N/A	N/A	d.58.16	Poly(A) polymerase, C-terminal domain
View	Download	0.508	N/A	N/A	a.121.1	Tetracyclin repressor-like, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits