YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349384, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	458 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349384, gi|....

Description	E-value	Query Range	Subject Range
gi\|77810868, gi\|... - gi\|77814123\|ref\|ZP_00813389.1\| GTP-binding signal recognition particle SRP54, G-domain [Shewanella p...	301.0	[0..1]	[458..1]
gi\|82720402, gi\|... - gi\|82742260\|ref\|ZP_00904959.1\| ATPas [Shewanella sp. W3-18-1], gi\|82720402\|gb\|EAP55269.1\| ATPas [She...	300.0	[0..1]	[458..1]
gi\|78505685, gi\|... - gi\|78686521\|ref\|ZP_00851287.1\| ATPas [Shewanella sp. ANA-3], gi\|78505685\|gb\|EAP19212.1\| ATPas [Shewa...	300.0	[0..1]	[458..1]
gi\|113969640, gi... - gi\|82495254\|ref\|ZP_00880831.1\| ATPas [Shewanella sp. MR-4], gi\|82406757\|gb\|EAP47420.1\| ATPas [Shewan...	297.0	[0..1]	[458..1]
gi\|78510294, gi\|... - gi\|78690265\|ref\|ZP_00854914.1\| ATPas [Shewanella sp. MR-7], gi\|78510294\|gb\|EAP23667.1\| ATPas [Shewan...	296.0	[0..1]	[458..1]
gi\|149113771, gi... - gi\|217972631\|ref\|YP_002357382.1\| flagellar biosynthesis regulator FlhF [Shewanella baltica OS223], g... gi\|113948292, gi... - gi\|160876162\|ref\|YP_001555478.1\| flagellar biosynthesis regulator FlhF [Shewanella baltica OS195], g...	291.0	[0..1]	[458..1]
gi\|68541540, gi\|... - gi\|68541540\|ref\|ZP_00581283.1\| GTP-binding signal recognition particle SRP54, G-domain [Shewanella b...	291.0	[0..1]	[458..1]
gi\|68545834, gi\|... - gi\|68545834\|ref\|ZP_00585383.1\| GTP-binding signal recognition particle SRP54, G-domain [Shewanella a...	270.0	[0..1]	[458..1]
gi\|84779043, gi\|... - gi\|85058523\|ref\|YP_454225.1\| signal recognition particle protein [Sodalis glossinidius str. 'morsita...	265.0	[0..156]	[454..1]
SRP54_MYCLE, SR5... - Signal recognition particle protein OS=Mycobacterium leprae GN=ffh PE=3 SV=1, (O33013) Signal recogn... SRP54_MYCLE - Signal recognition particle protein OS=Mycobacterium leprae (strain TN) GN=ffh PE=3 SV=1 gi\|221230331, gi... - gi\|221230331\|ref\|YP_002503747.1\| signal recognition particle protein [Mycobacterium leprae Br4923], ...	264.0	[0..156]	[456..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIKRFFAKD MRAALAQVKD TLGSDAVIMS NKKVNGGIEI VAAVDYDEPK AKASAAAPTF  60
   61 MDVSDDLVSL GGKAPIRAET KLKPSAPADS LQALLEKQQN RLNQQLTHQQ QDAELPAWAK 120
  121 GLQAPAAAKA ERRDIANSFD K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [142-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPQTSQKQNA DLEAMRDELA SLRNLLTHQV SALMTEHKKR IDPVGAMLES KLLEAEFSPA  60
   61 VASKLAALSQ HYTPAELVRA LPQSLANMLD NQGDDIVKQG GVVALVGPTG VGKTTSLAKL 120
  121 AARFAAHHGA DQVALITTDH YRIGAYEQLA TYGKIMGCPV KQAHDLAELE QILYQFRNRK 180
  181 LVLIDTAGMG QRDMRLYQQL DNLTANSRIP IRSYLVLSAT GQRRVLQDAV NHFKRIPLSG 240
  241 VVLTKLDESV SLAGALSVLI QSGLPLSYVT DGQRVPEDMK VADTLMLAEQ ALAALENTEQ 300
  301 QSLPDTAWSD NMTCAFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.39794
Match:	2j289
Description:	No description for 2j289 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits