YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349383, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349383, gi|....

Description	E-value	Query Range	Subject Range
gi\|71909714, gi\|... - gi\|71909714\|ref\|YP_287301.1\| chromosome segregation ATPase [Dechloromonas aromatica RCB], gi\|7184933...	203.0	[0..10]	[254..1]
gi\|221321318 - gi\|221321318\|ref\|ZP_03602612.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... gi\|221325601 - gi\|221325601\|ref\|ZP_03606895.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein soj OS=Bacillus subtilis GN=soj PE=1 SV=1 gi\|221316405 - gi\|221316405\|ref\|ZP_03598210.1\| chromosome partitioning protein; transcriptional regulator [Bacillus... SOJ_BACSU - Sporulation initiation inhibitor protein Soj OS=Bacillus subtilis (strain 168) GN=soj PE=1 SV=1	200.0	[0..10]	[253..2]
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	199.0	[0..11]	[259..3]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	198.0	[0..11]	[255..3]
gi\|113936703, gi... - gi\|167648981\|ref\|YP_001686644.1\| cobyrinic acid ac-diamide synthase [Caulobacter sp. K31], gi\|167351...	197.0	[0..2]	[255..1]
gi\|52788041, gi\|... - gi\|52788041\|ref\|YP_093870.1\| hypothetical protein BLi04369 [Bacillus licheniformis ATCC 14580], gi\|5...	196.0	[0..10]	[253..2]
PARA_CAUCR - Chromosome partitioning protein ParA OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=parA PE... PARA_CAUCR - Chromosome partitioning protein ParA OS=Caulobacter crescentus GN=parA PE=3 SV=1 PARA_CAUCN - Chromosome partitioning protein ParA OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=parA PE=1 ...	196.0	[0..5]	[260..1]
gi\|60593886, gi\|... - gi\|60594421\|pdb\|2BEJ\|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein Soj, gi\|60...	196.0	[0..5]	[256..1]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	196.0	[0..10]	[254..2]

Back

Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMNQPYNEKV KVIAVTGGKG GVGKTSVSIN TAVALAEKGK RVLVLDADLG LANVDVMLGI  60
   61 RAERNLSHVL SGDAELDDII VRGPKGIGIV PATSGTQGMV ELSPAQHAGL IRAFSEMRTQ 120
  121 FDILIVDTAA GISDMVLSFS RASQDVLVVV CDEPTSITDA YALIKILSRE HGVFRFKIVA 180
  181 NMVRSLREGM ELFAKLSKVT DRFLDVALEL VATIPFDENL RKSVRKQKLV VEAYPKSPSA 240
  241 IAYHGLANKI MSWPVPQQPG GHLEFFVERL VHRPDFQEEK TSE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.30103
Match:	1wcv1
Description:	Structure of the bacterial chromosome segregation protein Soj
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits