YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374704, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374704, gi|....

Description	E-value	Query Range	Subject Range
gi\|82495274, gi\|... - gi\|82495274\|ref\|ZP_00880851.1\| chain length determinant protein [Shewanella sp. MR-4], gi\|82406777\|g...	243.0	[0..1]	[321..1]
gi\|145565327, gi... - gi\|77814103\|ref\|ZP_00813369.1\| Lipopolysaccharide biosynthesis [Shewanella putrefaciens CN-32], gi\|7...	240.0	[0..1]	[321..1]
gi\|114046890, gi... - gi\|78690285\|ref\|ZP_00854934.1\| chain length determinant protein [Shewanella sp. MR-7], gi\|78510314\|g...	239.0	[0..1]	[321..1]
gi\|28805203, gi\|... - gi\|28896995\|ref\|NP_796600.1\| OtnB protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28805203\|dbj\|BA... gi\|28805203 - gi\|28805203\|dbj\|BAC58484.1\| OtnB protein [Vibrio parahaemolyticus RIMD 2210633] gi\|153839163, gi... - gi\|153839163\|ref\|ZP_01991830.1\| OtnB protein [Vibrio parahaemolyticus AQ3810], gi\|149747335\|gb\|EDM58...	236.0	[0..1]	[321..1]
gi\|75831216, gi\|... - gi\|75831216\|ref\|ZP_00760482.1\| COG3206: Uncharacterized protein involved in exopolysaccharide biosyn... gi\|3724304, gi\|1... - gi\|603895\|emb\|CAA56223.1\| otnB [Vibrio cholerae], gi\|3724304\|dbj\|BAA33593.1\| probable regulation of ...	231.0	[0..1]	[327..1]
gi\|113907533, gi... - gi\|160876142\|ref\|YP_001555458.1\| lipopolysaccharide biosynthesis protein [Shewanella baltica OS195],...	231.0	[0..1]	[321..1]
gi\|120598284, gi... - gi\|82742241\|ref\|ZP_00904940.1\| chain length determinant protein [Shewanella sp. W3-18-1], gi\|8272038...	229.0	[0..22]	[324..2]
gi\|254225684, gi... - gi\|75818182\|ref\|ZP_00748385.1\| COG3206: Uncharacterized protein involved in exopolysaccharide biosyn... tr\|A0A085T897\|A0... - Chain length determinant family protein OS=Vibrio cholerae GN=DN30_2335 PE=4 SV=1	227.0	[0..1]	[321..1]
gi\|78360155, gi\|... - gi\|78367805\|ref\|ZP_00838067.1\| Lipopolysaccharide biosynthesis [Shewanella sp. PV-4], gi\|78360155\|gb...	226.0	[0..16]	[321..116]
gi\|91226592, gi\|... - gi\|91226592\|ref\|ZP_01261316.1\| OtnB protein [Vibrio alginolyticus 12G01], gi\|91189066\|gb\|EAS75348.1\|...	217.0	[0..1]	[320..1]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTQITQNPN TYQSDARFPQ VQDDEIDLRE LFAVIWRGKW IILAVTALFA VGAVVFAIKQ  60
   61 PNIYKSEALL APASEEQGGG LSALASQFGG LASLAGVNLG GKGGTDKTEL AIQVLKSRQF 120
  121 TSEFIQKHNI LADLMAAEKW DRDADKLIYD PELFNEQTNT WVREVKAPFK PEPSMQEAYK 180
  181 AFSKMIVVNK AKDTGMVTLS VEHLSPTVAQ QWVTWLIQDI NKVMKERDVA EAHRSTEFLN 240
  241 KQIASTNVAD IKTVLYKLIE EQAKTI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.0
Match:	PF02706.6
Description:	No description for PF02706.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [267-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAEVRDEYV FKTIDPALAP EEKAKPKRAL ICALGTMLGG MLGVMLVLVR HFMRKEQNLE  60
   61 SRV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits