YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349355, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349355, gi|....

Description	E-value	Query Range	Subject Range
gi\|11280102, gi\|... - gi\|6009648\|dbj\|BAA85006.1\| ORF1P [Plesiomonas shigelloides], pir\|\|T44509 Vi polysaccharide biosynthe...	361.0	[0..1]	[426..12]
gi\|74315059, gi\|... - gi\|74315059\|ref\|YP_313477.1\| putative UDP-glucose 6-dehydrogenase [Shigella sonnei Ss046], gi\|738585... gi\|6009797, gi\|1... - gi\|6009797\|dbj\|BAA85071.1\| ORF1S [Shigella sonnei], gi\|15149173\|gb\|AAK85164.1\| putative UDP-glucose ...	360.0	[0..1]	[426..12]
gi\|116185406, gi... - gi\|75856054\|ref\|ZP_00763689.1\| COG0677: UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Vibrio sp. E...	360.0	[0..1]	[426..1]
gi\|21112576, gi\|... - gi\|21230958\|ref\|NP_636875.1\| UDP-glucose dehydrogenase [Xanthomonas campestris pv. campestris str. A... gi\|66769040, gi\|... - gi\|66769040\|ref\|YP_243802.1\| UDP-glucose dehydrogenase [Xanthomonas campestris pv. campestris str. 8...	358.0	[0..8]	[424..1]
gi\|114225845, gi... - gi\|78702286\|ref\|ZP_00866726.1\| UDP-glucose 6-dehydrogenase [Alkalilimnicola ehrlichei MLHE-1], gi\|78...	357.0	[0..8]	[422..1]
gi\|58581689, gi\|... - gi\|58581689\|ref\|YP_200705.1\| UDP-glucose dehydrogenase [Xanthomonas oryzae pv. oryzae KACC10331], gi...	357.0	[0..8]	[424..1]
gi\|84623603, gi\|... - gi\|84623603\|ref\|YP_450975.1\| UDP-glucose dehydrogenase [Xanthomonas oryzae pv. oryzae MAFF 311018], ...	357.0	[0..8]	[424..1]
gi\|71065216, gi\|... - gi\|71065216\|ref\|YP_263943.1\| putative UDP-glucose/GDP-mannose dehydrogenase [Psychrobacter arcticus ...	357.0	[0..2]	[426..1]
gi\|37526392, gi\|... - gi\|37526392\|ref\|NP_929736.1\| hypothetical protein plu2500 [Photorhabdus luminescens subsp. laumondii...	357.0	[0..8]	[425..1]
gi\|21242302, gi\|... - gi\|21242302\|ref\|NP_641884.1\| UDP-glucose dehydrogenase [Xanthomonas axonopodis pv. citri str. 306], ...	356.0	[0..8]	[424..1]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFDVVNAKI GIIGLGYVGL PLAVEFGKQR LTIGFDINQA RINELSAGHD STLECSDTEL  60
   61 AEAKKLVYTT SLEALKECNV FIVTVPTPID EHKQPDLTPL IKASETLGKV IKHGDVIIYE 120
  121 STVYPGATEE ECIPVVEQVS GLKFNQDFFA GYSPERINPG DKEHRVTNIL KVTSGSTPEV 180
  181 AEYVDQLYKS IIVAGTHKAS SIKVAEAAKV IENTQRDVNI ALINELSIIF NKLGIDTLEV 240
  241 LEAAGTKWNF LPFRPGLVGG HCIGVDPYYL THKAQSVGYH PEMILAGRRL NDGMGQYVVS 300
  301 QLVKKMLKKR IHVEGANVLV MGLTFKENCP DLRNTKVVDI VRELKEYNIN VDIVDPWCES 360
  361 HEAEQEYGLT LCGQPKVNHY DAIIIAVSHN EFRAMGAEAI RALGKPEHVL YDLKYVLNKE 420
  421 SVDMRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.045757
Match:	2q3eA
Description:	No description for 2q3eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits