YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349351, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	304 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349351, gi|....

Description	E-value	Query Range	Subject Range
gi\|1098479 - gi\|1098479\|gb\|AAC37050.1\| glucose-1-phosphate thymidyl transferase [Neisseria meningitidis]	328.0	[0..3]	[301..2]
gi\|115279742, gi... - gi\|29725990\|gb\|AAO88922.1\| glucose-1-phosphate thymidylyltransferase [Vibrio cholerae], gi\|115279742...	323.0	[0..15]	[304..1]
gi\|33637041 - gi\|33637041\|gb\|AAQ23679.1\| glucose-1-phosphate thymidyltransferase [Geobacillus stearothermophilus]	323.0	[0..15]	[304..1]
gi\|7434861, gi\|3... - pir\|\|T00103 glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) - Actinobacillus actinomycetemco...	323.0	[0..15]	[302..1]
gi\|11261719 - pir\|\|B81240 glucose-1-phosphate thymidylyltransferase NMB0080, NMB0062 [imported] - Neisseria mening... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B (strain MC58) GN=rml... RMLA_NEIMB - Glucose-1-phosphate thymidylyltransferase OS=Neisseria meningitidis serogroup B GN=rmlA1 PE=3 SV=2	321.0	[0..15]	[301..1]
gi\|45250012 - gi\|45250012\|gb\|AAS55725.1\| glucose-1-phosphate thymidyltransferase [Aneurinibacillus thermoaerophilu...	320.0	[0..15]	[301..1]
gi\|68196230, gi\|... - gi\|69244639\|ref\|ZP_00602903.1\| Glucose-1-phosphate thymidylyltransferase, long form [Enterococcus fa... gi\|48826109 - ref\|ZP_00287334.1\| COG1209: dTDP-glucose pyrophosphorylase [Enterococcus faecium]	320.0	[0..15]	[302..1]

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Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELNTQHSTL KTHNTKGIIL AGGSGTRLYP ITKGVSKQLL PVYDKPMIYY PISVLMLAGI  60
   61 RDILIITTPE DQSSFQRLLG DGSDFGISLQ YAVQVTPDGL AQAFIIGEEF IGNDNVCLAL 120
  121 GDNIFWGQGF SPILKKAAAR PTGASVFGYQ VKDPERFGVV EFDQDLKAIS IEEKPLKPKS 180
  181 NFAVTGLYFY DNRVVNIAKN VKPSERGELE ITSINQAYLE MGKLNVELLG RGFAWLDTGT 240
  241 YESLLEAASF VETIEKRQGY KIACLEEIAW RNHWLSNEQI LKVANEMSKN SYGQYLLGLV 300
  301 EIKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1mc3A
Description:	RffH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uridylyltransferase activity	3.74072767898515	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.65167602524122	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	2.46432078102948	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity	2.17535315350752	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
nucleotidyltransferase activity	1.17054423506287	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.02084820914491	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
mannosyltransferase activity	0.91123217364068	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.513376694534047	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: