YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349350, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349350, gi|....

Description	E-value	Query Range	Subject Range
gi\|20807143 - gi\|20807143\|ref\|NP_622314.1\| predicted pyridoxal phosphate-dependent enzyme apparently involved in r... gi\|20515639, gi\|... - gi\|20807143\|ref\|NP_622314.1\| cell wall biogenesis regulatory protein [Thermoanaerobacter tengcongens...	260.0	[0..1]	[357..5]
gi\|84489111, gi\|... - gi\|84489111\|ref\|YP_447343.1\| pyridoxal phosphate-dependent enzyme [Methanosphaera stadtmanae DSM 309...	257.0	[0..1]	[356..1]
gi\|18977139, gi\|... - gi\|18977139\|ref\|NP_578496.1\| pleiotropic regulatory protein degT [Pyrococcus furiosus DSM 3638], gi\|...	253.0	[0..1]	[357..1]
gi\|82500285, gi\|... - gi\|82500285\|ref\|ZP_00885706.1\| pyridoxal phosphate-dependent enzyme apparently involved in regulatio...	250.0	[0..1]	[357..4]
gi\|14521367, gi\|... - gi\|5458585\|emb\|CAB50073.1\| Pleiotropic regulatory protein degT [Pyrococcus abyssi GE5], gi\|14521367\|... gi\|7433467, gi\|5... - pir\|\|D75096 aspartate aminotransferase (aspb-like1) PAB0774 - Pyrococcus abyssi (strain Orsay), gi\|5...	250.0	[0..1]	[357..1]
gi\|7433462 - pir\|\|H69142 perosamine synthetase - Methanobacterium thermoautotrophicum (strain Delta H) gi\|15678362, gi\|... - gi\|2621390\|gb\|AAB84840.1\| perosamine synthetase [Methanothermobacter thermautotrophicus str. Delta H...	246.0	[0..1]	[358..1]
gi\|25286040 - pir\|\|H87374 perosamine synthetase [imported] - Caulobacter crescentus GDPPS_CAUCR - GDP-perosamine synthase OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=per PE=1 SV=1 gi\|221234001, gi... - gi\|221234001\|ref\|YP_002516437.1\| perosamine synthetase [Caulobacter crescentus NA1000], gi\|220963173...	245.0	[0..2]	[357..7]
gi\|48852222 - ref\|ZP_00306411.1\| COG0399: Predicted pyridoxal phosphate-dependent enzyme apparently involved in re... gi\|255669507, gi... - gi\|69269411\|ref\|ZP_00609847.1\| DegT/DnrJ/EryC1/StrS aminotransferase [Ferroplasma acidarmanus Fer1],...	245.0	[0..1]	[358..1]
gi\|44920671, gi\|... - gi\|45357914\|ref\|NP_987471.1\| DegT/DnrJ/EryC1/StrS aminotransferase [Methanococcus maripaludis S2], g...	245.0	[0..1]	[355..1]
gi\|20093596, gi\|... - gi\|20093596\|ref\|NP_613443.1\| pyridoxal-phosphate-dependent enzyme apparently involved in regulation ...	244.0	[0..2]	[357..17]

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Predicted Domain #1

Region A:
Residues: [1-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILLNKPVAP NLQKLNSYLE RVHDTGWYTN FGPLHNELTE KLEEYLGVSN LLLVSNGTLA  60
   61 IQLAAKVFNV KQTITTPFSF VATSSSLLWQ GIDLAYSDIE RSSLNICPEE LEKNWKSNDS 120
  121 YDSLLATHVY GNPCDVQKID EIAKKYNKKI MYDAAHAFGI KVGNKSVLSF GDASTLSFHA 180
  181 TKVFHTVEGG AVIFKDRNHF DEAKSLINFG IQNDGTLGTP GINAKLNEYQ AAVGLCLLES 240
  241 IDDIICHRSN LFEIYRKELS NVIELPLWHR DSNYNGAYMP ILPSTEVERL KIGEQLKANN 300
  301 IQFRRYFYPS LDKAYLRVKS FNCPVSNYIA ENALCLPLHM YMTKEDVLKI TATIKEIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	2po3A
Description:	No description for 2po3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits