YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349336, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349336, gi|....

Description	E-value	Query Range	Subject Range
gi\|20905589, gi\|... - gi\|21227244\|ref\|NP_633166.1\| glycosyltransferase [Methanosarcina mazei Go1], gi\|20905589\|gb\|AAM30838...	273.0	[0..3]	[375..1]
Y1607_METJA, YG0... - (Q59002) Hypothetical glycosyl transferase MJ1607 (EC 2.-.-.-), Uncharacterized glycosyltransferase ... Y1607_METJA - Uncharacterized glycosyltransferase MJ1607 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM...	259.0	[0..3]	[372..1]
gi\|166857219, gi... - gi\|76795460\|ref\|ZP_00777833.1\| Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus AT... gi\|166853121, gi... - gi\|167038881\|ref\|YP_001661866.1\| glycogen synthase [Thermoanaerobacter sp. X514], gi\|166853121\|gb\|AB... gi\|242231503, gi... - gi\|242256969\|ref\|ZP_04801848.1\| glycogen synthase [Thermoanaerobacter sp. X513], gi\|242231503\|gb\|EES... gi\|241885025, gi... - gi\|241902563\|ref\|ZP_04787296.1\| glycogen synthase [Thermoanaerobacter brockii subsp. finnii Ako-1], ...	253.0	[0..2]	[373..3]
gi\|45047722, gi\|... - gi\|45358856\|ref\|NP_988413.1\| glycosyl transferase, group 1 [Methanococcus maripaludis S2], gi\|450477...	252.0	[0..3]	[372..1]
gi\|147920342, gi... - gi\|147920342\|ref\|YP_685885.1\| glycosyltransferase (group 1) [uncultured methanogenic archaeon RC-I],...	252.0	[0..3]	[375..1]
gi\|57159582, gi\|... - gi\|57641258\|ref\|YP_183736.1\| glycosyl transferase family protein [Thermococcus kodakarensis KOD1], g...	250.0	[0..3]	[373..1]
gi\|220932435, gi... - gi\|89210731\|ref\|ZP_01189117.1\| Glycosyl transferase, group 1 [Halothermothrix orenii H 168], gi\|8915...	247.0	[0..3]	[373..1]
gi\|125714043, gi... - gi\|67873277\|ref\|ZP_00503556.1\| Glycosyl transferase, group 1 [Clostridium thermocellum ATCC 27405], ...	247.0	[0..3]	[373..1]
gi\|7427929 - pir\|\|C69098 probable hexosyltransferase (EC 2.4.1.-) MTH173 - Methanobacterium thermoautotrophicum (... gi\|15678201, gi\|... - gi\|2621216\|gb\|AAB84679.1\| LPS biosynthesis RfbU related protein [Methanothermobacter thermautotrophi...	246.0	[0..3]	[374..4]
gi\|7433883 - pir\|\|F71196 probable hexosyltransferase (EC 2.4.1.-) PH1844 - Pyrococcus horikoshii gi\|3258282, gi\|1... - gi\|3258282\|dbj\|BAA30965.1\| 381aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591592\|...	245.0	[0..3]	[373..4]

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Predicted Domain #1

Region A:
Residues: [1-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPKILFVVN VDWFFVSHRL PIAVAAQNVG YDVHIACQVT DKKQELEGYG FTVHSISLDR  60
   61 SGTSVLKEFQ TMLSIYRLIK KISPALMHMI TVKPVIYAGI AARILGVSKV ASISGLGFIF 120
  121 IAEGFKSKLL KSLITILYKL ALNDGKSRVI FQNDSDKGLF IRRGIISDSN TLLVRGSGVD 180
  181 LDKYQVKPEP ESYPVIVLLA RLLIDKGVLE FVQAAEILKS KGVPCKMVLA GDTDENPKSV 240
  241 SKNQITDWVN KGIVEYWGYS KDVNSTYANC HIAVLPSYRE GLPKSLIEAA ACGRAVITTD 300
  301 VPGCRDAITP NKTGLLVPVK SSLELALAIE TLCNDSKLRQ SLGQEGRQLA EQAFDIKSVI 360
  361 QIHLNLYADL LKGKPSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.154902
Match:	2gejA
Description:	No description for 2gejA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits