YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374685, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374685, gi|....

Description	E-value	Query Range	Subject Range
gi\|110675456, gi... - gi\|110800809\|ref\|YP_695048.1\| sugar transferase family protein [Clostridium perfringens ATCC 13124],... gi\|182380000, gi... - gi\|182380000\|gb\|EDT77479.1\| bacterial sugar transferase family protein [Clostridium perfringens NCTC... gi\|168214803, gi... - gi\|170713765\|gb\|EDT25947.1\| bacterial sugar transferase family protein [Clostridium perfringens CPE ... gi\|18309596, gi\|... - gi\|18309596\|ref\|NP_561530.1\| undecaprenyl phosphate galactosephosphotransferase [Clostridium perfrin...	264.0	[0..1]	[182..24]
gi\|14193660 - gi\|14193660\|gb\|AAK56074.1\|AF320320_2 PglB2 [Neisseria meningitidis]	262.0	[0..2]	[182..5]
gi\|52307599, gi\|... - gi\|52425547\|ref\|YP_088684.1\| WcaJ protein [Mannheimia succiniciproducens MBEL55E], gi\|52307599\|gb\|AA...	261.0	[0..1]	[182..1]
gi\|219994433, gi... - gi\|89210235\|ref\|ZP_01188626.1\| sugar transferase [Halothermothrix orenii H 168], gi\|89160095\|gb\|EAR7...	260.0	[0..1]	[183..43]
gi\|39996945, gi\|... - gi\|39996945\|ref\|NP_952896.1\| glycosyl transferase domain-containing protein [Geobacter sulfurreducen...	259.0	[0..2]	[183..82]
gi\|20807156, gi\|... - gi\|20807156\|ref\|NP_622327.1\| sugar transferase involved in lipopolysaccharide synthesis [Thermoanaer... gi\|20807156 - gi\|20807156\|ref\|NP_622327.1\| Sugar transferase involved in lipopolysaccharide synthesis [Thermoanaer...	259.0	[0..1]	[181..4]
gi\|75429187, gi\|... - gi\|75429187\|ref\|ZP_00732123.1\| Undecaprenyl-phosphate galactosephosphotransferase [Actinobacillus su...	259.0	[0..1]	[182..1]
gi\|46129154 - gi\|46129154\|ref\|ZP_00155838.2\| COG2148: Sugar transferases involved in lipopolysaccharide synthesis ...	257.0	[0..1]	[182..116]
gi\|24473739 - gi\|24473739\|gb\|AAL23730.1\| Eps3E [Streptococcus thermophilus]	257.0	[0..1]	[183..260]
gi\|4512008 - gi\|4512008\|gb\|AAD21565.1\| UDP-Gal::undecaprenolphosphate Gal-1-P transferase WbaP [Escherichia coli]	257.0	[0..2]	[182..279]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIRLIDFLA AFFGLLLLWP ILLIVTIIGL FDTGSPIFIQ TRVGKHKKPF NLVKFRTMSK  60
   61 DTASVASHLA SNAAITKFGG FLRKTKIDEL PQLINVLKGE MSLVGPRPNL FNQEELIAER 120
  121 DALGVYNVLP GVTGLAQVQN IDMSTPKLLA QTDKQMIDTL TLRSYFKYIL MTATGSGSGD 180
  181 AVKPS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.443697
Match:	PF02397.7
Description:	No description for PF02397.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits