YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349286, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	465 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349286, gi|....

Description	E-value	Query Range	Subject Range
gi\|78691511, gi\|... - gi\|78691511\|ref\|ZP_00856123.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella sp. MR-7], g...	327.0	[0..1]	[465..1]
gi\|82495314, gi\|... - gi\|82495314\|ref\|ZP_00880891.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella sp. MR-4], g...	327.0	[0..1]	[465..1]
gi\|217497862, gi... - gi\|217972727\|ref\|YP_002357478.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella baltica OS... gi\|153001342, gi... - gi\|153001342\|ref\|YP_001367023.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella baltica OS... gi\|160861583, gi... - gi\|160876061\|ref\|YP_001555377.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella baltica OS...	326.0	[0..1]	[465..1]
gi\|126175014, gi... - gi\|68540697\|ref\|ZP_00580447.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella baltica OS15...	326.0	[0..1]	[465..1]
gi\|117612194, gi... - gi\|78687144\|ref\|ZP_00851900.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella sp. ANA-3], ...	325.0	[0..1]	[465..1]
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	323.0	[0..1]	[461..376]
gi\|90409595, gi\|... - gi\|90409595\|ref\|ZP_01217612.1\| putative C4-dicarboxylate transport protein [Photobacterium profundum...	320.0	[0..1]	[462..1]
gi\|120598324, gi... - gi\|82742456\|ref\|ZP_00905148.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella sp. W3-18-1]... gi\|77808593, gi\|... - gi\|77816445\|ref\|ZP_00815632.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella putrefaciens...	320.0	[0..1]	[465..1]
gi\|46916973, gi\|... - gi\|54303543\|ref\|YP_133536.1\| putative C4-dicarboxylate transport protein [Photobacterium profundum S...	318.0	[0..1]	[462..1]
gi\|69950907, gi\|... - gi\|69950907\|ref\|ZP_00638699.1\| TRAP dicarboxylate transporter, DctM subunit [Shewanella frigidimarin...	314.0	[0..1]	[465..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIATLFCVL FICMFLGMPI AIALGFSSML TILFFSNDSL ASVALKLYES SSEHYTLLAI  60
   61 PFFILSSAFL STGGVARRII DFAMDCVGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG 120
  121 SIVIVGMVKA GYPEKFASGV ITTSGTLGIL IPPSIVMLVY AAATEVSVAK IFMAGLVPGL 180
  181 LLGFLIMVVI YIVARIKNLP SIPFPGFKKL GVSSAKAIGG LALIFIVLGS IYGGVASPTE 240
  241 ASAVACVYAY FIAVFGYRDI GPLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [265-465]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVAWRNPNEA IPSAIARNLG HMVLGLIKTP IDKEIRHVVR DGAKVSIMLL FIIANAMLFA  60
   61 HVLTTERIPH IIAEYIVGMG LPAWGFLIIV NLLLLAAGNF MEPSAIVLIM APILFPIATQ 120
  121 LGIDPIHLGI IMVVNMEIGM LTPPVGLNLF VTSGITGRNI GWVIQSVLPW LVFMLAFLML 180
  181 ITYVPQISLF LPELLDKLNG Y

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits