YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374651, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	339 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374651, gi|....

Description	E-value	Query Range	Subject Range
gi\|34496374, gi\|... - gi\|34496374\|ref\|NP_900589.1\| C4-dicarboxylate-binding periplasmic protein [Chromobacterium violaceum...	316.0	[0..13]	[336..1]
gi\|78515720, gi\|... - gi\|78696142\|ref\|ZP_00860652.1\| TRAP dicarboxylate transporter- DctP subunit [Bradyrhizobium sp. BTAi...	314.0	[0..5]	[336..16]
gi\|88934476, gi\|... - gi\|88934476\|ref\|ZP_01140118.1\| TRAP dicarboxylate transporter- DctP subunit [Geobacter uraniumreduce...	314.0	[0..16]	[337..3]
gi\|83309994, gi\|... - gi\|83309994\|ref\|YP_420258.1\| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticu...	314.0	[0..10]	[336..1]
gi\|46200935 - gi\|46200935\|ref\|ZP_00056052.2\| COG1638: TRAP-type C4-dicarboxylate transport system, periplasmic com...	311.0	[0..10]	[335..1]
gi\|71908606, gi\|... - gi\|71908606\|ref\|YP_286193.1\| TRAP dicarboxylate transporter- DctP subunit [Dechloromonas aromatica R...	310.0	[0..18]	[335..6]
gi\|56380348, gi\|... - gi\|56420506\|ref\|YP_147824.1\| C4-dicarboxylate transport system (C4-dicarboxylate-binding protein) [G...	309.0	[0..16]	[335..1]
gi\|37677250, gi\|... - gi\|37677250\|ref\|NP_937646.1\| TRAP-type C4-dicarboxylate transport system, periplasmic component [Vib...	308.0	[0..2]	[338..5]
gi\|14717009 - gi\|14717009\|emb\|CAC44171.1\| probable C4 dicarboxylate binding protein [Pseudomonas stutzeri] tr\|F8H3F2\|F8H3F2... - C4 dicarboxylate binding protein OS=Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 ... tr\|F2MV72\|F2MV72... - C4 dicarboxylate binding protein OS=Pseudomonas stutzeri (strain DSM 4166 / CMT.9.A) GN=dctP-1 PE=4 ...	308.0	[0..12]	[339..1]
gi\|49088174 - gi\|49088174\|gb\|AAT51540.1\| PA5167 [synthetic construct]	307.0	[0..15]	[339..5]

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Predicted Domain #1

Region A:
Residues: [1-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE  60
   61 LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL 120
  121 FNDMDAVNRF QQGEAGQALL NSMSRKGIVG LGYLHNGMKQ FTANTPLKQP SDAKGLKFRV 180
  181 MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN 240
  241 HGVLDYMVVT SDAFWKSLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKLSQL 300
  301 VTLSPAERQQ WVDVMKPVWS KFEDQVGKDV IEAAVAANK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2cexA
Description:	No description for 2cexA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits