YRC Public Data Repository - Protein Structure Prediction

Protein:	QUEA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	345 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QUEA_SHEON.

Description	E-value	Query Range	Subject Range
QUEA_SHESM - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Shewanella sp. (strain MR-4) GN=queA PE=3 ...	574.0	[0..1]	[345..1]
QUEA_SHESR - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Shewanella sp. (strain MR-7) GN=queA PE=3 ...	573.0	[0..1]	[345..1]
QUEA_SHESA - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Shewanella sp. (strain ANA-3) GN=queA PE=3...	572.0	[0..1]	[345..1]
QUEA_SHELP - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Shewanella loihica (strain ATCC BAA-1088 /...	571.0	[0..1]	[344..1]
gi\|82714500, gi\|... - gi\|82738420\|ref\|ZP_00901253.1\| Queuosine biosynthesis protein [Pseudomonas putida F1], gi\|82714500\|g...	566.0	[0..1]	[344..36]
QUEA_VIBPA - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Vibrio parahaemolyticus GN=queA PE=3 SV=1 QUEA_VIBPA - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Vibrio parahaemolyticus serotype O3:K6 (st...	566.0	[0..1]	[344..1]
gi\|151938856, gi... - gi\|75857384\|ref\|ZP_00765000.1\| COG0809: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queu...	563.0	[0..1]	[344..1]
gi\|95109206 - gi\|95109206\|emb\|CAK13903.1\| S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine biosyn... QUEA_PSEE4 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Pseudomonas entomophila (strain L48) GN=qu...	563.0	[0..1]	[344..1]
gi\|91225158, gi\|... - gi\|91225158\|ref\|ZP_01260380.1\| S-adenosylmethionine:tRNA ribosyltransferase-isomerase [Vibrio algino...	563.0	[0..1]	[344..1]
QUEA_PSESM - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Pseudomonas syringae pv. tomato GN=queA PE... QUEA_PSESM - S-adenosylmethionine:tRNA ribosyltransferase-isomerase OS=Pseudomonas syringae pv. tomato (strain DC...	563.0	[0..1]	[344..1]

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Predicted Domain #1

Region A:
Residues: [1-345]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVTDFSFDL PDELIARYPM AQRNASRLLT LDGNTGTLVD KQFTDLLGMI NPGDLMVFNN  60
   61 TRVIPARLFG QKASGGKLEI LVERMLDDKR ILAHVRSSKS PKVDSIIHLD GGYEMKMMAR 120
  121 HDALFELQLL SELSILEVLE AVGHMPLPPY IDRPDEDADK ERYQTVYNQN PGAVAAPTAG 180
  181 LHFDDAMLEA LKAKGVNIAF VTLHVGAGTF QPVRVDNVLE HKMHSEWANV PQDVVDLIAR 240
  241 TKAAGNRVVA VGTTSVRSLE SAARASAGQL NAFSGDTDIF IYPGYQFQVV DAMVTNFHLP 300
  301 ESTLIMLVSA FAGYEHVMAA YQHAIKQKYR FFSYGDAMFV TKKAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	153.0
Match:	1yy3A
Description:	No description for 1yy3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits