YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374624, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374624, gi|....

Description	E-value	Query Range	Subject Range
gi\|53729577, gi\|... - gi\|71906251\|ref\|YP_283838.1\| rhodanese-like protein [Dechloromonas aromatica RCB], gi\|71845872\|gb\|AA...	119.0	[0..6]	[132..5]
Y4798_COLP3 - UPF0176 protein CPS_4798 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=CPS_4798 PE=3 S...	118.0	[0..3]	[132..97]
gi\|88778277, gi\|... - gi\|88799050\|ref\|ZP_01114631.1\| hypothetical protein MED297_02587 [Reinekea sp. MED297], gi\|88778277\|...	116.0	[0..3]	[132..81]
gi\|78367031, gi\|... - gi\|78367031\|ref\|ZP_00837306.1\| Rhodanese-like [Shewanella sp. PV-4], gi\|78360974\|gb\|EAP02803.1\| Rhod...	116.0	[0..1]	[131..27]
Y411_PSYCK - UPF0176 protein Pcryo_0411 OS=Psychrobacter cryohalolentis (strain K5) GN=Pcryo_0411 PE=3 SV=1	116.0	[0..4]	[129..103]
gi\|46196415, gi\|... - gi\|46198792\|ref\|YP_004459.1\| putative transferase/hydrolase [Thermus thermophilus HB27], gi\|46196415... gi\|55980805, gi\|... - gi\|55980805\|ref\|YP_144102.1\| rhodanese-like domain-containing protein [Thermus thermophilus HB8], gi...	116.0	[0..28]	[132..2]
gi\|74057912, gi\|... - gi\|74318417\|ref\|YP_316157.1\| rhodanese-like protein [Thiobacillus denitrificans ATCC 25259], gi\|7405...	115.0	[0..3]	[131..9]
gi\|113866363, gi... - gi\|113866363\|ref\|YP_724852.1\| rhodanese-related sulfurtransferase [Ralstonia eutropha H16], gi\|11352...	115.0	[0..7]	[131..7]
gi\|148652206, gi... - gi\|91771076\|ref\|ZP_01272892.1\| Rhodanese-like [Psychrobacter sp. PRwf-1], gi\|91719842\|gb\|EAS85775.1\|...	114.0	[0..4]	[132..91]
Y522_HAHCH - UPF0176 protein HCH_00522 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_00522 PE=3 SV=1	114.0	[0..3]	[132..81]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNKLLFGSK KLLGVALLSL FSLSIVPHEA NAADQQPQVA WEKIASGAMV LDVRTPEEFA  60
   61 AGHLVNAVNI PFEQVAAEFA KRGIAKDTPV VLYCRSGRRS GIATDALVAA GYTKTYNGGG 120
  121 YQTLAETQPK TE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1qxnA
Description:	Solution Structure of the 30 kDa Polysulfide-sulfur Transferase Homodimer from Wolinella Succinogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.291319994167841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: