YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349219, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349219, gi|....

Description	E-value	Query Range	Subject Range
gi\|146273747, gi... - gi\|98662370\|dbj\|GAA00697.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476776...	130.0	[0..2]	[156..4]
gi\|67917134, gi\|... - gi\|67917134\|ref\|ZP_00510806.1\| Phosphoglycerate/bisphosphoglycerate mutase [Clostridium thermocellum...	123.0	[0..3]	[155..38]
GPMA_TREDE - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Treponema denticola GN=gpmA PE=3 SV=1 GPMA_TREDE - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Treponema denticola (strain ATCC 35405 ...	122.0	[0..1]	[104..1]
gi\|7451679 - pir\|\|G72260 phosphoglycerate mutase - Thermotoga maritima (strain MSB8) gi\|4981935, gi\|1... - gi\|4981935\|gb\|AAD36444.1\|AE001791_6 phosphoglycerate mutase [Thermotoga maritima MSB8], gi\|15644126\|...	120.0	[0..1]	[155..1]
PHOE_BACSU - Uncharacterized phosphatase phoE OS=Bacillus subtilis GN=phoE PE=3 SV=1 gi\|221313196 - gi\|221313196\|ref\|ZP_03595001.1\| hypothetical protein BsubsN3_05667 [Bacillus subtilis subsp. subtili... gi\|221318119 - gi\|221318119\|ref\|ZP_03599413.1\| hypothetical protein BsubsJ_05616 [Bacillus subtilis subsp. subtilis... gi\|221322394 - gi\|221322394\|ref\|ZP_03603688.1\| hypothetical protein BsubsS_05722 [Bacillus subtilis subsp. subtilis... PHOE_BACSU - Uncharacterized phosphatase PhoE OS=Bacillus subtilis (strain 168) GN=phoE PE=3 SV=1	119.0	[0..5]	[156..6]
gi\|34763468, gi\|... - gi\|34763468\|ref\|ZP_00144413.1\| Phosphoglycerate mutase [Fusobacterium nucleatum subsp. vincentii ATC...	119.0	[0..1]	[106..1]
gi\|110647741, gi... - gi\|110834630\|ref\|YP_693489.1\| phosphoglycerate mutase [Alcanivorax borkumensis SK2], gi\|110647741\|em...	119.0	[0..2]	[106..4]
GPMA_PORGI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Porphyromonas gingivalis (strain ATCC B... GPMA_PORGI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Porphyromonas gingivalis GN=gpmA PE=3 S... GPMA_PORG3 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Porphyromonas gingivalis (strain ATCC 3...	119.0	[0..2]	[106..3]
gi\|52079521, gi\|... - gi\|52784886\|ref\|YP_090715.1\| YhfR [Bacillus licheniformis ATCC 14580], gi\|52347388\|gb\|AAU40022.1\| Yh...	118.0	[0..3]	[156..4]
GPMA_BACFR - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacteroides fragilis (strain YCH46) GN=... GPMA_BACFN - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285... gi\|251946506, gi... - gi\|253565041\|ref\|ZP_04842497.1\| phosphoglyceromutase [Bacteroides sp. 3_2_5], gi\|251946506\|gb\|EES868... GPMA_BACFR - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmA PE=3 SV=1	118.0	[0..2]	[106..3]

Back

Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLFLMRHGE AGFNAQSDRD RTLTDVGRLH TVLMSNWLAR SVSDFDLVLV SPYLRAQQTW  60
   61 QELSQHFSEP RKWLVADDLV PSGDPANVAA LILAYAELYK ADKVLVISHM PLLGYLVSEL 120
  121 VAGVEPPLFA TSGITLIDKH AEQASLMWQH APHSIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1ujbA
Description:	Structure of the protein histidine phosphatase SixA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits