YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349199, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	431 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349199, gi|....

Description	E-value	Query Range	Subject Range
gi\|113884453, gi... - gi\|82496527\|ref\|ZP_00882094.1\| Folylpolyglutamate synthetase [Shewanella sp. MR-4], gi\|82405482\|gb\|E...	330.0	[0..14]	[431..13]
gi\|117612260, gi... - gi\|78686908\|ref\|ZP_00851668.1\| Folylpolyglutamate synthetase [Shewanella sp. ANA-3], gi\|78505306\|gb\|...	327.0	[0..14]	[431..13]
gi\|78690655, gi\|... - gi\|78690655\|ref\|ZP_00855297.1\| Folylpolyglutamate synthetase [Shewanella sp. MR-7], gi\|78509979\|gb\|E...	327.0	[0..14]	[431..13]
gi\|77975508 - gi\|77975508\|ref\|ZP_00831043.1\| COG0285: Folylpolyglutamate synthase [Yersinia frederiksenii ATCC 336...	324.0	[0..14]	[424..6]
gi\|77957379 - gi\|77957379\|ref\|ZP_00821437.1\| COG0285: Folylpolyglutamate synthase [Yersinia bercovieri ATCC 43970]	320.0	[0..15]	[424..7]
gi\|77960845, gi\|... - gi\|77960845\|ref\|ZP_00824700.1\| COG0285: Folylpolyglutamate synthase [Yersinia mollaretii ATCC 43969]...	319.0	[0..9]	[424..2]
gi\|50121978, gi\|... - gi\|50121978\|ref\|YP_051145.1\| bifunctional folylpolyglutamate synthase/ dihydrofolate synthase [Pecto...	314.0	[0..14]	[428..6]
gi\|77976970, gi\|... - gi\|77976970\|ref\|ZP_00832433.1\| COG0285: Folylpolyglutamate synthase [Yersinia intermedia ATCC 29909]...	312.0	[0..14]	[425..6]
gi\|76795846, gi\|... - gi\|76795846\|ref\|ZP_00778217.1\| Folylpolyglutamate synthetase [Thermoanaerobacter ethanolicus ATCC 33... gi\|241903724, gi... - gi\|241903724\|ref\|ZP_04788443.1\| FolC bifunctional protein [Thermoanaerobacter brockii subsp. finnii ...	310.0	[0..20]	[426..2]
gi\|110803060, gi... - gi\|110803060\|ref\|YP_699195.1\| FolC bifunctional protein [Clostridium perfringens SM101], gi\|11068356...	310.0	[0..20]	[428..3]

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Predicted Domain #1

Region A:
Residues: [1-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAPSEQAS SVTVPSANAP LEQWLAYLLS IHPTEIDMGL TRVSKVAQRL NVLDLGPSKV  60
   61 VTVGGTNGKG TTCAMLENIL RLSGLTVGVY SSPHMLKYNE RVRINGQDQS DEAFVAAFEQ 120
  121 IEAARGNISL TFFEYATLAG LILFKAAKLD VVILEVGLGG RLDATNMIDA DISAVTSVDL 180
  181 DHEAYLGNTR ELVGREKAGI FRQGKPAIVG EPNLPHTVND VAQQLGAKLY RVGTEFTYQQ 240
  241 NGHTWDYQGQ VLKLKQLSLP TLPNAATVIA IVEHGWPEIA ADIIAKGISS ARLTGRLEQV 300
  301 SEQPLILLDV AHNPHAARFL VKQLTPIVAG KRVFALCGML KDKDIGGVLP VVSPLIDTWY 360
  361 LVSLQGERGA HASLLRQTLT QETKACEFED IATAWTALKA QIQPDDVVIV FGSFYTVAGF 420
  421 KSLFKQDNRF V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.30103
Match:	1w78A
Description:	E.coli FolC in complex with DHPP and ADP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits