YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374585, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	495 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374585, gi|....

Description	E-value	Query Range	Subject Range
gi\|206743632, gi... - gi\|206978160\|ref\|ZP_03239042.1\| sodium/alanine symporter family protein [Bacillus cereus H3081.97], ... gi\|42779784, gi\|... - gi\|42779784\|ref\|NP_977031.1\| sodium/alanine symporter family protein [Bacillus cereus ATCC 10987], g...	287.0	[0..1]	[481..1]
gi\|49480224, gi\|... - gi\|49480224\|ref\|YP_034896.1\| sodium/alanine symporter family protein [Bacillus thuringiensis serovar...	287.0	[0..1]	[481..1]
gi\|51978142, gi\|... - gi\|52144673\|ref\|YP_082155.1\| sodium/alanine symporter family protein [Bacillus cereus E33L], gi\|5197...	287.0	[0..1]	[481..1]
gi\|47568089, gi\|... - gi\|47568089\|ref\|ZP_00238794.1\| sodium:alanine symporter family protein [Bacillus cereus G9241], gi\|4...	286.0	[0..1]	[481..2]
gi\|29894365, gi\|... - gi\|30018823\|ref\|NP_830454.1\| Sodium/proton-dependent alanine carrier protein [Bacillus cereus ATCC 1... gi\|229126069, gi... - gi\|229126069\|ref\|ZP_04255091.1\| sodium/alanine symporter [Bacillus cereus BDRD-Cer4], gi\|228657391\|g...	285.0	[0..2]	[481..3]
gi\|82496523, gi\|... - gi\|82496523\|ref\|ZP_00882090.1\| Sodium:alanine symporter [Shewanella sp. MR-4], gi\|82405478\|gb\|EAP461...	284.0	[0..1]	[484..1]
gi\|165872964, gi... - gi\|165872964\|ref\|ZP_02217587.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A04... gi\|170708468, gi... - gi\|170708468\|ref\|ZP_02898910.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A03... gi\|227816492, gi... - gi\|227816492\|ref\|YP_002816501.1\| sodium/alanine symporter family protein [Bacillus anthracis str. CD... gi\|167640904, gi... - gi\|167640904\|ref\|ZP_02399162.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A01... gi\|229603503, gi... - gi\|229603503\|ref\|YP_002865236.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A0... gi\|190560343, gi... - gi\|190568549\|ref\|ZP_03021455.1\| sodium/alanine symporter family protein [Bacillus anthracis Tsiankov... gi\|254738749 - gi\|254738749\|ref\|ZP_05196452.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Wes... gi\|177652818, gi... - gi\|177652818\|ref\|ZP_02935191.1\| sodium/alanine symporter family protein [Bacillus anthracis str. A01... gi\|254754975 - gi\|254754975\|ref\|ZP_05207009.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Vol... gi\|254762294 - gi\|254762294\|ref\|ZP_05214138.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Aus... gi\|49177557, gi\|... - gi\|49183630\|ref\|YP_026882.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Sterne... gi\|47551542, gi\|... - gi\|47777837\|ref\|YP_017266.2\| sodium/alanine symporter family protein [Bacillus anthracis str. 'Ames ... gi\|30254241, gi\|... - gi\|30260792\|ref\|NP_843169.1\| sodium/alanine symporter family protein [Bacillus anthracis str. Ames],... gi\|21398597, gi\|... - gi\|65318064\|ref\|ZP_00391023.1\| COG1115: Na+/alanine symporter [Bacillus anthracis str. A2012], ref\|N...	284.0	[0..1]	[481..1]
gi\|78509975, gi\|... - gi\|78690651\|ref\|ZP_00855293.1\| Sodium:alanine symporter [Shewanella sp. MR-7], gi\|78509975\|gb\|EAP233...	284.0	[0..1]	[484..1]
gi\|89150470, gi\|... - gi\|89201554\|ref\|ZP_01180293.1\| Sodium:alanine symporter [Bacillus cereus subsp. cytotoxis NVH 391-98...	284.0	[0..1]	[481..1]
gi\|117919932, gi... - gi\|78686912\|ref\|ZP_00851672.1\| Sodium:alanine symporter [Shewanella sp. ANA-3], gi\|78505310\|gb\|EAP18...	283.0	[0..1]	[488..1]

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Predicted Domain #1

Region A:
Residues: [1-495]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEIVNAVNN IVWSPALVYL CLGVGLFFSL RSRFLQLRHL PEMIRLMFDG KSTDAGVSSF  60
   61 QALAMTLAGR VGTGNIAGVA TAITFGGPGA LFWMWMVAFL GASSAFVEST LGQVYKEKIN 120
  121 GEYRGGPAFY IEKGLGMKWY AWTFAIATIF ACGVLLPGVQ ANSIGASLKT AFDIDPNVTA 180
  181 AVLAMLLGFI IFGGVKRIAN FATLVVPFMA LGYIIVACVI IALNIDQLPG ILWLIIKSAF 240
  241 GFDAGFGAIL GLAIMWGVKR GVYSNEAGQG TGPHASSAAA VTHPAKQGLV QAFSVYIDTL 300
  301 FVCSATGFML LITGLYNVQG PDGAALYTGI AGVAAGSGYV QTAMESMMPG FGNMFVAIAL 360
  361 FFFAFTTIVA YYYIAETNIA YINRKVNRPW LTVMLKVIIM ASTVYGTVKT ADLAWGMGDI 420
  421 GVGIMAWLNI IAIILLQKVA FTCLKDYESQ QKQGIEPQFD PEKLGIPHAD YWVERKNAQD 480
  481 EPMSIRHSIE SKKRV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.41
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits