YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349174, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349174, gi|....

Description	E-value	Query Range	Subject Range
gi\|39982072, gi\|... - gi\|39995310\|ref\|NP_951261.1\| isoquinoline 1-oxidoreductase, alpha subunit [Geobacter sulfurreducens ...	213.0	[0..17]	[164..1]
gi\|78509966, gi\|... - gi\|78690642\|ref\|ZP_00855284.1\| isoquinoline 1-oxidoreductase, alpha subunit, putative [Shewanella sp... gi\|78505322, gi\|... - gi\|78686924\|ref\|ZP_00851684.1\| isoquinoline 1-oxidoreductase, alpha subunit, putative [Shewanella sp...	210.0	[0..1]	[164..1]
gi\|67100529, gi\|... - gi\|67665974\|ref\|ZP_00463230.1\| Ferredoxin:[2Fe-2S]-binding [Burkholderia cenocepacia HI2424], gi\|671...	209.0	[0..10]	[164..26]
gi\|13815736, gi\|... - gi\|15899181\|ref\|NP_343786.1\| carbon monoxide dehydrogenase, small chain (cutC-1) [Sulfolobus solfata... gi\|25316890 - pir\|\|A99415 hypothetical protein cutC-1 [imported] - Sulfolobus solfataricus	208.0	[0..11]	[163..8]
gi\|82405470, gi\|... - gi\|82496515\|ref\|ZP_00882082.1\| isoquinoline 1-oxidoreductase, alpha subunit, putative [Shewanella sp...	208.0	[0..1]	[164..1]
gi\|109701107, gi... - gi\|76793907\|ref\|ZP_00776387.1\| Ferredoxin:(2Fe-2S)-binding [Pseudoalteromonas atlantica T6c], gi\|765...	207.0	[0..17]	[163..1]
gi\|15621562, gi\|... - gi\|15920779\|ref\|NP_376448.1\| dehydrogenase [Sulfolobus tokodaii str. 7], gi\|15621562\|dbj\|BAB65557.1\|...	206.0	[0..15]	[163..12]
gi\|62484833 - gi\|62484833\|emb\|CAI78850.1\| 4-hydroxybenzoyl-CoA reductase alpha/gamma subunit (hcrC/hcrA) [uncultur...	206.0	[0..19]	[162..6]
gi\|48846382, gi\|... - gi\|78224673\|ref\|YP_386420.1\| ferredoxin:(2Fe-2S)-binding protein [Geobacter metallireducens GS-15], ...	206.0	[0..15]	[161..1]
gi\|14022569, gi\|... - gi\|14022569\|dbj\|BAB49178.1\| oxidoreductase, iron-sulphur binding subunit [Mesorhizobium loti MAFF303...	206.0	[0..13]	[164..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPSSAAKD KSLTTPSLNL TINGRSFTLN ADPNMPILWA LRDILGLTGT KYGCGAGLCG  60
   61 ACTVHVDGQP VRACLTSVSQ AQGKQLTTIE GLDNQKLKNA WAEHNVPQCG YCQAGQLMSA 120
  121 AALVTQHPKP SAEQIDAAMS GNLCRCGTYP RIKAALQSYA KQEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	1ffuA
Description:	Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain; Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	1.8452767229444	bayes_pls_golite062009
oxidoreductase activity	1.29798120961328	bayes_pls_golite062009
catalytic activity	0.475559813757564	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: