YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349154, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	700 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349154, gi|....

Description	E-value	Query Range	Subject Range
gi\|17230080, gi\|... - gi\|17230080\|ref\|NP_486628.1\| ferrichrome-iron receptor [Nostoc sp. PCC 7120], gi\|17131681\|dbj\|BAB742... gi\|25318826 - pir\|\|AE2129 ferrichrome-iron receptor [imported] - Nostoc sp. (strain PCC 7120)	376.0	[0..1]	[700..165]
gi\|67087745, gi\|... - gi\|67153612\|ref\|ZP_00415357.1\| TonB-dependent siderophore receptor [Azotobacter vinelandii AvOP], gi...	375.0	[0..1]	[699..59]
gi\|11351573 - pir\|\|A83043 probable outer membrane protein PA4837 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9951106, gi\|1... - gi\|9951106\|gb\|AAG08222.1\|AE004896_12 probable outer membrane protein precursor [Pseudomonas aerugino...	367.0	[0..11]	[700..22]
gi\|84317475 - gi\|84317475\|ref\|ZP_00965918.1\| COG1629: Outer membrane receptor proteins, mostly Fe transport [Pseud...	366.0	[0..11]	[700..18]
gi\|84323502 - gi\|84323502\|ref\|ZP_00971571.1\| COG1629: Outer membrane receptor proteins, mostly Fe transport [Pseud...	365.0	[0..11]	[700..18]
gi\|115588206, gi... - gi\|116052985\|ref\|YP_793303.1\| putative uter membrane protein precursor [Pseudomonas aeruginosa UCBPP...	365.0	[0..11]	[700..22]
gi\|107103936 - gi\|107103936\|ref\|ZP_01367854.1\| hypothetical protein PaerPA_01005007 [Pseudomonas aeruginosa PACS2]	365.0	[0..11]	[700..18]
gi\|187477707, gi... - gi\|187477707\|ref\|YP_785731.1\| TonB-dependent siderophore receptor [Bordetella avium 197N], gi\|115422...	364.0	[0..10]	[700..112]
gi\|94417449, gi\|... - gi\|94417449\|ref\|ZP_01297267.1\| hypothetical protein PaerP_01000766 [Pseudomonas aeruginosa PA7], gi\|...	357.0	[0..11]	[700..18]

Back

Predicted Domain #1

Region A:
Residues: [1-700]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYAYADTSD NQKKSTKDIE IINVVGAKDL HDKRYKTPAM NTATGLDLSY LETPQSVTSV  60
   61 TRQMMQDQQL NSVIEAMTSV AGINARPMDN DRYSISSRGI AVTSILYDGV PTTYDTRFNY 120
  121 GDNLIDTAIY ERVEIVRGAT GLMTGAGNPS AAINLVRKRP TQEFMGSTSV SVGSWNNLRG 180
  181 MVDLSSGLTD SGNIRGRVVA AYQDKESFQD RYQQQRTTLY GIVETDISDS TLLTLGADYQ 240
  241 DTTPEATMSG GLPLFHSDGS RTNYDRATST APDWASAHTQ GLNSFASLEH RFDNGWELKG 300
  301 TYSYGDNSLE YNVLWATGYP DPVTNLGATA GSIAYIDGSR TQHNLDLRAQ GMFALFGQEH 360
  361 QLTFGWTGQR QEFANPYYYP TAAVPPLGDF RDPNFQYPKP QWKETHTTGS FGETEQSAAY 420
  421 VATQLNLTDA LALLAGLRLN QWQTDQNNFG SLYDFNVDNE LTTYLGLTYA LTEQYSLYAS 480
  481 YTDIFAPQTL QRIDASYIDP VKGKNYEAGI KASLMDESLD MSLSVFEIRQ DNVGERTGDV 540
  541 LPGTTIPVYR EVNGTQTQGF EFESTGKITD DWNIYFGYTQ FSTDDPKGNR INTTSPRQQL 600
  601 KLFTTYTFSG DWNKLQLGAG VNWQSRVYQT VNSPLGRVEV EQDSYALASL MTSYAFTEQL 660
  661 KLSANVHNAL DKTYYSQVGQ YSQFQYGTPR SVSVNLDYRF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.221849
Match:	2iahA
Description:	No description for 2iahA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits