YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349153, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	601 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349153, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509953, gi\|... - gi\|78690629\|ref\|ZP_00855271.1\| siderophore biosynthesis protein, putative [Shewanella sp. MR-7], gi\|...	649.0	[0..1]	[601..29]
gi\|82405460, gi\|... - gi\|82496505\|ref\|ZP_00882072.1\| siderophore biosynthesis protein, putative [Shewanella sp. MR-4], gi\|...	645.0	[0..1]	[601..29]
gi\|78505333, gi\|... - gi\|78686935\|ref\|ZP_00851695.1\| siderophore biosynthesis protein, putative [Shewanella sp. ANA-3], gi...	639.0	[0..1]	[601..29]
gi\|75909045, gi\|... - gi\|75909045\|ref\|YP_323341.1\| IucA/IucC [Anabaena variabilis ATCC 29413], gi\|75702770\|gb\|ABA22446.1\| ...	631.0	[0..5]	[601..8]
gi\|36787876, gi\|... - gi\|37528438\|ref\|NP_931783.1\| hypothetical protein plu4621 [Photorhabdus luminescens subsp. laumondii...	621.0	[0..4]	[591..14]
gi\|113950761, gi... - gi\|160875922\|ref\|YP_001555238.1\| IucA/IucC family protein [Shewanella baltica OS195], gi\|160861444\|g...	620.0	[0..1]	[600..38]
gi\|68519334, gi\|... - gi\|68542965\|ref\|ZP_00582684.1\| IucA/IucC [Shewanella baltica OS155], gi\|68519334\|gb\|EAN42872.1\| IucA...	614.0	[0..1]	[600..38]
gi\|33602870, gi\|... - gi\|33602870\|ref\|NP_890430.1\| alcaligin biosynthesis protein [Bordetella bronchiseptica RB50], gi\|335... gi\|33574392 - gi\|33574392\|emb\|CAE38730.1\| alcaligin biosynthesis protein [Bordetella parapertussis] gi\|1778030, gi\|1... - gi\|1778030\|gb\|AAB40620.1\| AlcC [Bordetella bronchiseptica], pir\|\|T44595 alcaligin synthesis protein ... gi\|33597963 - gi\|33597963\|ref\|NP_885606.1\| alcaligin biosynthesis protein [Bordetella parapertussis 12822]	613.0	[0..3]	[595..14]
gi\|77815320, gi\|... - gi\|77815320\|ref\|ZP_00814556.1\| IucA/IucC [Shewanella putrefaciens CN-32], gi\|77809700\|gb\|EAO94093.1\|...	612.0	[0..1]	[592..38]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHLTPQHW QAANRHLVKK ILCEFTHEKL ITPQIYAQGA KVNHYELRLN DCTYYFSACH  60
   61 YQLDHLDIAT DSIRVTSAGT ERPLDAMRLI ISLKNVLGIS ETLLPTYLEE ITSTLYSKSY 120
  121 KLAHQAIPAA KLAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADYQTIEAGM TEGHPVFIAN NGRIGFDMQD YYQFAPESAT ALKLVWIAVR KDKTTFSALE  60
   61 GVDHDTLLKQ ELGEQFTEFQ QQLIAQGQTS DAFYFMPVHP WQWREKIART FAGEIARGDI 120
  121 IYLGESQDCY QVQQSIRTFF NLSAPQKCYV KTALSILNMG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [295-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FMRGLSPLYM SCTPQINAWV ANLIESDDYF AEQGFVILKE IAAIGYHHRY YEEALTQDSA  60
   61 YKKMLSALWR ESPLPHIEPQ QTLMTMAALL HIDHQEQALI AELIEHSGLN AKEWVTRYLK 120
  121 LYLSPLLHAF FAYDLVFMPH GENLILVLDA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [445-601]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIPVKILMKD IGEEVAVLNG SEPLPKEVQR LAVELEEEMK LNYILLDIFD CIFRYLAPIL  60
   61 DKQTEVSETQ FWELVADNVR DYQTQHPHLA DKFAQYDLFK DSFVRTCLNR IQLNNNQQMI 120
  121 DLADREKNLR FAGGLDNPLA AFRQSHAFGS ANMKLKP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits