YRC Public Data Repository - Protein Structure Prediction

Protein:	TRPD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TRPD_SHEON.

Description	E-value	Query Range	Subject Range
gi\|196253698, gi... - gi\|196253698\|ref\|ZP_03152312.1\| anthranilate phosphoribosyltransferase [Clostridium thermocellum DSM... TRPD_CLOTH - Anthranilate phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / N...	411.0	[0..6]	[345..2]
TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 266... TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii GN=trpD PE=3 SV=1	393.0	[0..6]	[341..2]
gi\|147920704, gi... - gi\|147920704\|ref\|YP_685492.1\| anthranilate synthase, component II (including glutamine amidotransfer...	385.0	[0..5]	[343..189]
TRPD_BRADU - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 1362... TRPD_BRAJA - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=trpD PE=3 SV=1	383.0	[0..5]	[343..3]
gi\|68248169, gi\|... - gi\|69255804\|ref\|ZP_00605546.1\| Anthranilate phosphoribosyl transferase [Magnetococcus sp. MC-1], gi\|...	382.0	[0..4]	[347..1]
TRPD_METBF - Anthranilate phosphoribosyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=trpD P...	382.0	[0..6]	[345..1]
TRPD_RHOP5 - Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=trpD PE=3 SV...	380.0	[0..4]	[343..2]
TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans GN=trpD PE=3 SV=1 TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 /...	380.0	[0..6]	[345..4]
TRPD_GEOMG - Anthranilate phosphoribosyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM...	379.0	[0..6]	[344..2]
gi\|95930492, gi\|... - gi\|95930492\|ref\|ZP_01313228.1\| anthranilate phosphoribosyltransferase [Desulfuromonas acetoxidans DS...	377.0	[0..6]	[344..2]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETSIQPLL DILFQGKALT REQTASLFSV LIQGEMNETV MAGMLMALKI RGETIEEISG  60
   61 AADAMRAAAK PFPYPESSRS QGVIDIVGTG GDGFNTINIS TTAAFVAAAA GAKVAKHGNR 120
  121 SVSSKSGSSD LLAQFGIDLT MSPELASHCL EALNLCFLFA PHYHGGVKHA VPVRQTLKTR 180
  181 TLFNVLGPLI NPARPEFMLL GVYSAELVTP IARVLQALGT QRAMVVHGSG LDEVALHGST 240
  241 QVAELKDGEI IEYQLTPADF GVPQAHISEL EGGEPAHNAL ITQQILQGHG CDAHTHAVAI 300
  301 NAGCALYLCG LSESVKMGTA LALSTIKTGK AYELLHKLAT VSSQSQE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.69897
Match:	1kgzA
Description:	Anthranilate phosphoribosyltransferase (TrpD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
anthranilate phosphoribosyltransferase activity	4.94723089078793	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.602719004527	bayes_pls_golite062009
catalytic activity	2.36226573018655	bayes_pls_golite062009
transferase activity	1.44341339379755	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	1.42809090251675	bayes_pls_golite062009
anthranilate synthase activity	0.23338579105964	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: