YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349100, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349100, gi|....

Description	E-value	Query Range	Subject Range
gi\|116250024, gi... - gi\|116250024\|ref\|YP_765862.1\| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae...	88.0	[0..1]	[80..1]
gi\|91191378, gi\|... - gi\|91223886\|ref\|ZP_01259150.1\| putative transcriptional regulator [Vibrio alginolyticus 12G01], gi\|9...	88.0	[0..8]	[87..1]
gi\|25490641 - pir\|\|E84013 hypothetical protein BH2909 [imported] - Bacillus halodurans (strain C-125) gi\|10175531, gi\|... - gi\|15615472\|ref\|NP_243775.1\| hypothetical protein BH2909 [Bacillus halodurans C-125], gi\|10175531\|db...	88.0	[0..1]	[87..1]
gi\|28806770 - gi\|28806770\|dbj\|BAC60041.1\| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633... gi\|28898552, gi\|... - gi\|28898552\|ref\|NP_798157.1\| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIM... gi\|153836272, gi... - gi\|153836272\|ref\|ZP_01988939.1\| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3...	87.0	[0..8]	[87..1]
gi\|25519852 - pir\|\|D97388 probable DNA-binding protein (AL138598) [imported] - Agrobacterium tumefaciens (strain C... gi\|15887595, gi\|... - gi\|15887595\|ref\|NP_353276.1\| hypothetical protein AGR_C_418 [Agrobacterium tumefaciens str. C58], gi...	86.0	[0..1]	[86..12]
gi\|116094819, gi... - gi\|52858120\|ref\|ZP_00341786.1\| hypothetical protein Lgas_03000656 [Lactobacillus gasseri ATCC 33323]... gi\|52858120 - gi\|52858120\|ref\|ZP_00341786.1\| COG1396: Predicted transcriptional regulators [Lactobacillus gasseri]	86.0	[0..9]	[82..1]
gi\|86355908, gi\|... - gi\|86355908\|ref\|YP_467800.1\| LacI family transcription regulator [Rhizobium etli CFN 42], gi\|8628001...	86.0	[0..5]	[86..1]
gi\|92114209, gi\|... - gi\|92114209\|ref\|YP_574137.1\| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3...	85.0	[0..8]	[82..1]
gi\|22778541, gi\|... - gi\|23100309\|ref\|NP_693776.1\| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831], gi\|22778...	85.0	[0..2]	[88..19]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNVINSMSR TDNMNNISIY RKKAGLSQTE LGKQIGKTQG AVGNYEAGIR NIDLTTCWEI  60
   61 VKAFNQSGVE CSFSDVFPEP ISESNQVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.154902
Match:	2p5tA
Description:	No description for 2p5tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits