YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349089, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349089, gi|....

Description	E-value	Query Range	Subject Range
gi\|75194504, gi\|... - gi\|75194504\|ref\|ZP_00704574.1\| COG0582: Integrase [Escherichia coli HS], gi\|157159783\|ref\|YP_0014571...	210.0	[0..6]	[391..1]
gi\|190902162, gi... - gi\|75229050\|ref\|ZP_00715634.1\| COG0582: Integrase [Escherichia coli B7A], gi\|191167819\|ref\|ZP_030296...	208.0	[0..6]	[389..1]
gi\|253975488, gi... - gi\|254163587\|ref\|YP_003046695.1\| Int [Escherichia coli B str. REL606], gi\|253975488\|gb\|ACT41159.1\| I... gi\|194435929, gi... - gi\|83588494\|ref\|ZP_00927118.1\| COG0582: Integrase [Escherichia coli 101-1], gi\|194435929\|ref\|ZP_0306... gi\|57545625 - gi\|57545625\|gb\|AAW51716.1\| Int [Escherichia coli] gi\|26250313, gi\|... - gi\|26250313\|ref\|NP_756353.1\| putative prophage integrase [Escherichia coli CFT073], gi\|26110743\|gb\|A... gi\|251786909, gi... - gi\|251786909\|ref\|YP_003001213.1\| hypothetical protein B21_03468 [Escherichia coli BL21], gi\|24237918... gi\|254290337, gi... - gi\|254290337\|ref\|YP_003056085.1\| Int [Escherichia coli BL21(DE3)], gi\|253979644\|gb\|ACT45314.1\| Int [...	207.0	[0..6]	[389..1]
gi\|14252927 - gi\|14252927\|emb\|CAC39282.1\| integrase [Escherichia coli]	207.0	[0..6]	[389..1]
gi\|77974232, gi\|... - gi\|77974232\|ref\|ZP_00829773.1\| COG0582: Integrase [Yersinia frederiksenii ATCC 33641], gi\|238790928\|...	206.0	[0..6]	[398..1]
gi\|74314106, gi\|... - gi\|74314106\|ref\|YP_312525.1\| putative integrase [Shigella sonnei Ss046], gi\|73857583\|gb\|AAZ90290.1\| ...	206.0	[0..6]	[389..1]
gi\|110617213, gi... - gi\|110807665\|ref\|YP_691185.1\| putative integrase [Shigella flexneri 5 str. 8401], gi\|110617213\|gb\|AB... gi\|11278380, gi\|... - gi\|5532446\|gb\|AAD44730.1\|AF141323_1 Int [Shigella flexneri], pir\|\|T44463 integrase int [imported] - ...	206.0	[0..6]	[389..1]
gi\|28872456, gi\|... - gi\|28872456\|ref\|NP_795075.1\| phage integrase family site specific recombinase [Pseudomonas syringae ... tr\|Q87UF4\|Q87UF4... - Site-specific recombinase, phage integrase family OS=Pseudomonas syringae pv. tomato (strain DC3000)...	205.0	[0..6]	[394..1]
gi\|77962153, gi\|... - gi\|77962153\|ref\|ZP_00825977.1\| COG0582: Integrase [Yersinia mollaretii ATCC 43969], gi\|238795435\|ref...	205.0	[0..6]	[390..1]
gi\|49612200, gi\|... - gi\|50121674\|ref\|YP_050841.1\| prophage integrase [Pectobacterium atrosepticum SCRI1043], gi\|49612200\|...	204.0	[0..1]	[393..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIACIALSD AAIKRAVADE SITEIRDPRY PLRLRLGSSR SRGSWYLVTN KDGKASWAKV  60
   61 ANWPLVSAKA IIDDLPTLSI QHRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.888	N/A	N/A	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14

Predicted Domain #2

Region A:
Residues: [85-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQSVKVNTWL SCGGLLNWYL TRSQADTSLS IKRRRNIKCT IVKHLLPVLG EVMLSELNHH  60
   61 KVDELLIWPL QARYSIGSVR QYYAVLRKAF KQATVLKLIS DDPLASLSFT DFIATPIATK 120
  121 PPQLQATDLP KLLSDLDTAS DSAALLVFIM LAYGTRIGET RLLKWSYYDE PNAKLVIPAN 180
  181 ITKTQAQLTI PISGLMADIL RWHKSMQAAA GYRGGYLFPH PCRNTGLDER GANSLVKQVS 240
  241 GGEWTAHDLR KLARSCWADL GIDYMVAEQM LNHSMTKLDQ AYIHTYLADQ KREAIELWHK 300
  301 HLLSIHHLFA ERICK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits