YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349084, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349084, gi|....

Description	E-value	Query Range	Subject Range
gi\|16764388, gi\|... - gi\|16764388\|ref\|NP_460003.1\| lysozyme [Phage Gifsy-2], gi\|16419542\|gb\|AAL19962.1\| Gifsy-2 prophage l... gi\|62181184, gi\|... - gi\|62181184\|ref\|YP_217601.1\| Gifsy-2 prophage lysozyme [Salmonella enterica subsp. enterica serovar ... gi\|206708422, gi... - gi\|207856619\|ref\|YP_002243270.1\| putative phage lysozyme [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=STM14_1168] [protein=lysozyme] [protein_id=YP_005236758.1] [location=1073569..1074021] gi\|169257296 - gi\|169257296\|ref\|YP_001700672.1\| bacteriophage lysis protein; endolysin; lysozyme [Phage Gifsy-2] gi\|205352446, gi... - gi\|205352446\|ref\|YP_002226247.1\| putative phage lysozyme [Salmonella enterica subsp. enterica serova...	174.0	[0..10]	[167..2]
gi\|62127189, gi\|... - gi\|62179556\|ref\|YP_215973.1\| Gifsy-2 prophage lysozyme [Salmonella enterica subsp. enterica serovar ...	173.0	[0..10]	[167..1]
ENLYS_BPB03 - Endolysin OS=Bacillus phage B103 GN=15 PE=3 SV=1	172.0	[0..10]	[168..1]
gi\|9626404 - gi\|9626404\|ref\|NP_040733.1\| morphogenesis protein B [Bacillus phage phi29] ENLYS_BPPZA - Endolysin OS=Bacillus phage PZA GN=15 PE=3 SV=1	168.0	[0..10]	[168..1]
gi\|13936334 - gi\|13936334\|gb\|AAK40280.1\| endolysin [Bacillus amyloliquefaciens phage Morita2001]	166.0	[0..10]	[168..1]
gi\|48995186, gi\|... - gi\|49206939\|ref\|YP_026136.1\| Mur1 [Serratia entomophila], gi\|48995186\|gb\|AAT48337.1\| Mur1 [Serratia ...	166.0	[0..10]	[167..1]
gi\|32128440, gi\|... - gi\|32128440\|ref\|NP_858975.1\| phage-type lysozyme [Xanthomonas phage Xp10], gi\|31788503\|gb\|AAP58695.1...	163.0	[0..3]	[168..59]
gi\|71065592, gi\|... - gi\|71065592\|ref\|YP_264319.1\| putative bacteriophage lysozyme [Psychrobacter arcticus 273-4], gi\|7103...	163.0	[0..11]	[165..56]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNKVLVTGL SLSAAALITL VSSEGFSPVA EIPVKGDRPT LGFGSTYHAD GRPVKLGETT  60
   61 TPINALKTAK AHIDKDEQRF RASLPNVELN QASYDLYIDW TYQYGIGRWL ASPMRGHLIQ 120
  121 GEYQQSCDAL LLPEYRTVAG YDCSTPGNKR CYGVWLRAQQ RHRDCLDALN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.221849
Match:	2anvA
Description:	crystal structure of P22 lysozyme mutant L86M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits