YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374495, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374495, gi|....

Description	E-value	Query Range	Subject Range
gi\|82741551, gi\|... - gi\|82741551\|ref\|ZP_00904270.1\| HNH nuclease [Shewanella sp. W3-18-1], gi\|82721115\|gb\|EAP55962.1\| HNH...	109.0	[0..1]	[109..1]
gi\|46197224, gi\|... - gi\|46199598\|ref\|YP_005265.1\| 5-methylcytosine-specific restriction enzyme A [Thermus thermophilus HB... gi\|55981629, gi\|... - gi\|55981629\|ref\|YP_144926.1\| hypothetical protein TTHA1660 [Thermus thermophilus HB8], gi\|55773042\|d...	103.0	[0..11]	[105..61]
gi\|71549091, gi\|... - gi\|71549091\|ref\|ZP_00669298.1\| HNH endonuclease [Nitrosomonas eutropha C71], gi\|71485250\|gb\|EAO17800...	98.0	[0..5]	[109..27]
gi\|26990588, gi\|... - gi\|26990588\|ref\|NP_746013.1\| phage holin, putative [Pseudomonas putida KT2440], gi\|24985571\|gb\|AAN69...	97.0	[0..18]	[109..13]
gi\|71677476, gi\|... - gi\|71677476\|ref\|ZP_00675213.1\| HNH endonuclease [Trichodesmium erythraeum IMS101], gi\|71669390\|gb\|EA...	95.0	[0..11]	[105..56]
gi\|56686863, gi\|... - gi\|56751904\|ref\|YP_172605.1\| restriction endonuclease [Synechococcus elongatus PCC 6301], gi\|5668686... gi\|81301011, gi\|... - gi\|81301011\|ref\|YP_401219.1\| HNH nuclease [Synechococcus elongatus PCC 7942], gi\|81169892\|gb\|ABB5823...	94.0	[0..11]	[105..54]
gi\|25535752 - pir\|\|AI2570 hypothetical protein all8564 [imported] - Nostoc sp. (strain PCC 7120) plasmid pCC7120de... gi\|17134927, gi\|... - gi\|17232937\|ref\|NP_489475.1\| hypothetical protein all8564 [Nostoc sp. PCC 7120], gi\|17134927\|dbj\|BAB...	93.0	[0..14]	[105..77]
gi\|86608883, gi\|... - gi\|86608883\|ref\|YP_477645.1\| HNH endonuclease domain protein [Cyanobacteria bacterium Yellowstone B-... gi\|86608883, gi\|... - gi\|86608883\|ref\|YP_477645.1\| HNH endonuclease domain-containing protein [Synechococcus sp. JA-2-3B'a...	92.0	[0..18]	[105..61]
gi\|71481945, gi\|... - gi\|71481945\|ref\|ZP_00661647.1\| HNH endonuclease [Prosthecochloris vibrioformis DSM 265], gi\|71283255...	92.0	[0..18]	[105..69]
gi\|68551816, gi\|... - gi\|68551816\|ref\|ZP_00591210.1\| HNH endonuclease [Prosthecochloris aestuarii DSM 271], gi\|68241313\|gb...	92.0	[0..18]	[105..69]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQPSWRDDK RKTAERGYGG RWQKARETFL KRNPLCCFCQ QKNIITAATV VDHKIPHKGD  60
   61 QSLFWDTNNW QPLCKHCHDS TKKVMESRGV KLGADESGKP TDPNHHWNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.522879
Match:	2qgpA
Description:	No description for 2qgpA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits