YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374491, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374491, gi|....

Description	E-value	Query Range	Subject Range
gi\|38505385, gi\|... - gi\|38707893\|ref\|NP_945033.1\| gp3 [Burkholderia phage phi1026b], gi\|38505385\|gb\|AAR23154.1\| gp3 [Bact...	501.0	[0..1]	[431..1]
gi\|82721112, gi\|... - gi\|82741548\|ref\|ZP_00904267.1\| Phage portal protein, HK97 [Shewanella sp. W3-18-1], gi\|82721112\|gb\|E...	482.0	[0..1]	[432..1]
gi\|26988297, gi\|... - gi\|26988297\|ref\|NP_743722.1\| HK97 family phage portal protein [Pseudomonas putida KT2440], gi\|249830...	479.0	[0..18]	[429..8]
gi\|5059250, gi\|9... - gi\|9635589\|ref\|NP_061500.1\| portal protein [Pseudomonas phage D3], gi\|5059250\|gb\|AAD38955.1\| portal ...	478.0	[0..5]	[430..3]
gi\|76578627, gi\|... - gi\|76809174\|ref\|YP_333083.1\| HK97 family phage portal protein [Burkholderia pseudomallei 1710b], gi\|...	477.0	[0..29]	[431..2]
gi\|125974137, gi... - gi\|67916086\|ref\|ZP_00509808.1\| Phage portal protein, HK97 family [Clostridium thermocellum ATCC 2740...	461.0	[0..16]	[421..1]
gi\|166854137, gi... - gi\|167039897\|ref\|YP_001662882.1\| HK97 family phage portal protein [Thermoanaerobacter sp. X514], gi\|...	460.0	[0..16]	[422..3]
gi\|57224605, gi\|... - gi\|57234157\|ref\|YP_181802.1\| HK97 family portal protein , putative [Dehalococcoides ethenogenes 195]...	455.0	[0..16]	[423..1]
gi\|50914486, gi\|... - gi\|50914486\|ref\|YP_060458.1\| portal protein [Streptococcus pyogenes MGAS10394], gi\|50903560\|gb\|AAT87... gi\|50261615, gi\|... - gi\|50261615\|gb\|AAT72383.1\| phage portal protein [Streptococcus pyogenes], gi\|40218570\|gb\|AAR83224.1\|...	450.0	[0..27]	[417..14]
gi\|77640198, gi\|... - gi\|77683953\|ref\|ZP_00799393.1\| Phage portal protein, HK97 [Alkaliphilus metalliredigenes QYMF], gi\|7...	446.0	[0..16]	[416..3]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQKNSLALV IAKAASQPFA SLDSFMGKTL RLTDGDFWSQ LMATSKSGKT VNVNTAMQLA  60
   61 AVWACVRRIS ETVAMLPLGL YERQSDGGRI QVQNSLSTVL SIKPNADMTA MQFWEAVLAS 120
  121 LLLKGNAFIE IHRSGGEIIA LDFLMPHRMD IDLDDSGSLI YWYTPRNGSR RQIKKQNMMH 180
  181 IPAFSLDGLI GLSTISYGAN VFGGAMSAED VSASTFKNGM TKTVAFKVDR VMNKEQRAEF 240
  241 REYVKTITGA MNAGKSPVLE QGITPELIGI NPIDAQLLES RNYSVEEICR WFLVDPSLIG 300
  301 FGGKDSNWGT GLEQKMIGFV TLTLSSWIRR IEQSISINLL TPAQRQTQYA QYNLEALLRG 360
  361 DSASRAEFYS KMTQNGIYTR DDCRVKENLP RRGGNADVLT VQTNLAPIDQ LGAQSESAKV 420
  421 QAALNNWLNQ DN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	2jesA
Description:	No description for 2jesA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits