YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349058, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	111 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349058, gi|....

Description	E-value	Query Range	Subject Range
gi\|75239571, gi\|... - gi\|75239571\|ref\|ZP_00723541.1\| COG4718: Phage-related protein [Escherichia coli F11], gi\|191173189\|r...	171.0	[0..2]	[110..1]
gi\|62127198, gi\|... - gi\|62179565\|ref\|YP_215982.1\| Gifsy-2 prophage minor tail protein [Salmonella enterica subsp. enteric... gi\|205341537, gi... - gi\|205360029\|ref\|ZP_02834013.2\| phage minor tail protein [Salmonella enterica subsp. enterica serova... gi\|205337108, gi... - gi\|205359279\|ref\|ZP_02668760.2\| phage minor tail protein [Salmonella enterica subsp. enterica serova... gi\|205272241, gi... - gi\|205352460\|ref\|YP_002226261.1\| Minor Tail Component [Salmonella enterica subsp. enterica serovar G... gi\|197938332, gi... - gi\|198243816\|ref\|YP_002215253.1\| phage minor tail protein [Salmonella enterica subsp. enterica serov... gi\|194447929, gi... - gi\|194447929\|ref\|YP_002045046.1\| phage minor tail protein [Salmonella enterica subsp. enterica serov...	171.0	[0..1]	[108..1]
gi\|25301963 - pir\|\|F90733 probable minor tail protein [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|15830092, gi\|... - gi\|15830092\|ref\|NP_308865.1\| putative minor tail protein [Escherichia coli O157:H7], gi\|13360297\|dbj... gi\|168800755, gi... - gi\|189376993\|gb\|EDU95409.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|195936799 - gi\|195936799\|ref\|ZP_03082181.1\| putative minor tail protein [Escherichia coli O157:H7 str. EC4024] gi\|208727728, gi... - gi\|208807927\|ref\|ZP_03250264.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|208814832, gi... - gi\|208814832\|ref\|ZP_03256011.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|208822051, gi... - gi\|208822051\|ref\|ZP_03262370.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|209397074, gi... - gi\|209397074\|ref\|YP_002269431.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4115], gi... gi\|215486163, gi... - gi\|215486163\|ref\|YP_002328594.1\| predicted minor tail protein [Escherichia coli O127:H6 str. E2348/6... gi\|217324383, gi... - gi\|217324383\|ref\|ZP_03440467.1\| phage minor tail protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|188015476, gi... - gi\|188015476\|gb\|EDU53598.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|189355891, gi... - gi\|189355891\|gb\|EDU74310.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168763402, gi... - gi\|189366458\|gb\|EDU84874.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|189363540, gi... - gi\|189363540\|gb\|EDU81959.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187768148, gi... - gi\|187768148\|gb\|EDU31992.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|148524725, gi... - gi\|148609396\|ref\|YP_001272527.1\| putative minor tail protein [Phage cdtI], gi\|148524725\|dbj\|BAF63347... gi\|189002780, gi... - gi\|189002780\|gb\|EDU71766.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168786972, gi... - gi\|189373033\|gb\|EDU91449.1\| phage minor tail protein [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|254591355, gi... - gi\|254791955\|ref\|YP_003076792.1\| putative tail component of prophage CP-933K [Escherichia coli O157:... gi\|218551665, gi... - gi\|218551665\|ref\|YP_002385457.1\| Minor tail protein M [Escherichia fergusonii ATCC 35469], gi\|218359... gi\|218351830, gi... - gi\|218695098\|ref\|YP_002402765.1\| Minor tail protein M [Escherichia coli 55989], gi\|218351830\|emb\|CAU... gi\|218703109, gi... - gi\|218703109\|ref\|YP_002410738.1\| Minor tail protein M [Escherichia coli IAI39], gi\|218373095\|emb\|CAR... gi\|91214074, gi\|... - gi\|91214074\|ref\|YP_544060.1\| putative minor tail protein [Escherichia coli UTI89], gi\|91075648\|gb\|AB... gi\|218705036, gi... - gi\|218705036\|ref\|YP_002412555.1\| Minor tail protein M [Escherichia coli UMN026], gi\|218432133\|emb\|CA... gi\|15830092, gi\|... - gi\|15830092\|ref\|NP_308865.1\| putative minor tail protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|75208864, gi\|... - gi\|75208864\|ref\|ZP_00709145.1\| COG4718: Phage-related protein [Escherichia coli B171], gi\|194429891\|...	171.0	[0..2]	[110..1]
gi\|75511107, gi\|... - gi\|75511107\|ref\|ZP_00733835.1\| COG4718: Phage-related protein [Escherichia coli 53638], gi\|188496325...	170.0	[0..2]	[110..1]
gi\|9634135, gi\|6... - gi\|9634135\|ref\|NP_037677.1\| gp17 [Enterobacteria phage HK022], gi\|6863127\|gb\|AAF30368.1\|AF069308_16 ...	170.0	[0..2]	[111..3]
gi\|2232363\|gb\|AA... - lambda phage M tail component homolog [Salmonella typhimurium] gi\|16419557, gi\|... - gi\|16764402\|ref\|NP_460017.1\| minor tail protein [Phage Gifsy-2], gi\|16419557\|gb\|AAL19976.1\| Gifsy-2 ... gi\|2232363 - gi\|2232363\|gb\|AAB62387.1\| lambda phage M tail component homolog [Salmonella typhimurium] lcl\|NC_016856.1_... - [gene=STM14_1182] [protein=minor tail protein] [protein_id=YP_005236772.1] [location=1087352..108768... gi\|205328510, gi... - gi\|205357956\|ref\|ZP_02574504.2\| phage minor tail protein [Salmonella enterica subsp. enterica serova... gi\|169257311 - gi\|169257311\|ref\|YP_001700687.1\| bacteriophage tail tip assembly protein; Lambda gpM homolog [Phage ... gi\|194404699, gi... - gi\|194446036\|ref\|YP_002040244.1\| phage minor tail protein [Salmonella enterica subsp. enterica serov...	169.0	[0..1]	[108..1]
gi\|115515845, gi... - gi\|117626721\|ref\|YP_860044.1\| putative minor tail protein [Escherichia coli APEC O1], gi\|115515845\|g... gi\|218368361, gi... - gi\|218561592\|ref\|YP_002394505.1\| Minor tail protein M [Escherichia coli S88], gi\|218368361\|emb\|CAR06...	169.0	[0..2]	[110..1]
gi\|190900490, gi... - gi\|75227214\|ref\|ZP_00714016.1\| COG4718: Phage-related protein [Escherichia coli B7A], gi\|191169464\|r...	169.0	[0..2]	[110..1]
gi\|73856350, gi\|... - gi\|74312873\|ref\|YP_311292.1\| putative minor tail protein [Shigella sonnei Ss046], gi\|73856350\|gb\|AAZ...	169.0	[0..2]	[110..1]
gi\|227836652, gi... - gi\|227886448\|ref\|ZP_04004253.1\| phage tail protein [Escherichia coli 83972], gi\|227836652\|gb\|EEJ4711... gi\|91071927, gi\|... - gi\|91210353\|ref\|YP_540339.1\| minor tail protein [Escherichia coli UTI89], gi\|91071927\|gb\|ABE06808.1\|... gi\|117623364, gi... - gi\|117623364\|ref\|YP_852277.1\| minor tail protein [Escherichia coli APEC O1], gi\|115512488\|gb\|ABJ0056... gi\|218558071, gi... - gi\|218558071\|ref\|YP_002390984.1\| Minor tail protein M [Escherichia coli S88], gi\|218364840\|emb\|CAR02...	169.0	[0..2]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQTFTWAPD NGATGDTQYR TRSAQFGDGY SQSAGDGINS KVQSWPLTFT KKIAMAEAII  60
   61 GFFDEHQGAK SFIWTPPLGT ASLWQVKQVT NTPLGGGMYR IAATFEQAFH P

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	61.721246
Match:	PF05939.4
Description:	No description for PF05939.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits