YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374475, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374475, gi|....

Description	E-value	Query Range	Subject Range
TIPL_BPN15 - Tail tip protein L OS=Enterobacteria phage N15 GN=gene 18 PE=3 SV=1	414.0	[0..2]	[241..3]
gi\|9634136, gi\|6... - gi\|9634136\|ref\|NP_037678.1\| gp18 [Enterobacteria phage HK022], gi\|6863128\|gb\|AAF30369.1\|AF069308_17 ...	412.0	[0..2]	[241..3]
gi\|120599267, gi... - gi\|82741533\|ref\|ZP_00904252.1\| Phage minor tail protein L [Shewanella sp. W3-18-1], gi\|82721097\|gb\|E...	408.0	[0..1]	[241..1]
gi\|149292365, gi... - gi\|149365952\|ref\|ZP_01887987.1\| putative phage protein [Yersinia pestis CA88-4125], gi\|149292365\|gb\|... gi\|167401467, gi... - gi\|167401467\|ref\|ZP_02306964.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. UG05... gi\|145210000, gi... - gi\|145598304\|ref\|YP_001162380.1\| hypothetical protein YPDSF_1007 [Yersinia pestis Pestoides F], gi\|1... gi\|166211207, gi... - gi\|166211207\|ref\|ZP_02237242.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. B420... gi\|167426599, gi... - gi\|167426599\|ref\|ZP_02318352.1\| phage minor tail protein L [Yersinia pestis biovar Mediaevalis str. ... gi\|166961990, gi... - gi\|167420295\|ref\|ZP_02312048.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. M... gi\|167466947 - gi\|167466947\|ref\|ZP_02331651.1\| phage minor tail protein L [Yersinia pestis FV-1] gi\|22126082, gi\|... - gi\|22126082\|ref\|NP_669505.1\| phage tail protein [Yersinia pestis KIM], gi\|21959038\|gb\|AAM85756.1\|AE0... gi\|25301991 - pir\|\|AI0258 probable phage protein YPO2122 [imported] - Yersinia pestis (strain CO92) gi\|115347836, gi... - gi\|218929225\|ref\|YP_002347100.1\| hypothetical protein YPO2122 [Yersinia pestis CO92], gi\|16122357\|re... gi\|165939397, gi... - gi\|89104371\|ref\|ZP_01176916.1\| COG4672: Phage-related protein [Yersinia pestis biovar Orientalis str... gi\|108807479, gi... - gi\|108807479\|ref\|YP_651395.1\| hypothetical protein YPA_1483 [Yersinia pestis Antiqua], gi\|108779392\|... gi\|165991678, gi... - gi\|166009123\|ref\|ZP_02230021.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. E197... gi\|108775404, gi... - gi\|229902047\|ref\|ZP_04517168.1\| putative phage protein [Yersinia pestis Nepal516], gi\|229680943\|gb\|E... gi\|165920329, gi... - gi\|165927715\|ref\|ZP_02223547.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. F... gi\|77634475, gi\|... - gi\|77634475\|ref\|ZP_00796575.1\| COG4672: Phage-related protein [Yersinia pestis Angola], gi\|162421326... gi\|229897541, gi... - gi\|229897541\|ref\|ZP_04512697.1\| putative phage protein [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229898186, gi... - gi\|229898186\|ref\|ZP_04513334.1\| putative phage protein [Yersinia pestis biovar Orientalis str. India...	407.0	[0..2]	[241..3]
gi\|9634175, gi\|6... - gi\|9634175\|ref\|NP_037712.1\| Gp18 [Enterobacteria phage HK97], gi\|6901604\|gb\|AAF31107.1\| Gp18 [Bacter...	399.0	[0..2]	[241..3]
gi\|40218247, gi\|... - gi\|46402103\|ref\|YP_006597.1\| Gp17 [Klebsiella phage phiKO2], gi\|40218247\|gb\|AAR83033.1\| Gp17 [Bacter...	391.0	[0..2]	[241..3]
gi\|63256721, gi\|... - gi\|66046014\|ref\|YP_235855.1\| Phage minor tail protein L [Pseudomonas syringae pv. syringae B728a], g...	379.0	[0..2]	[240..3]
gi\|11351086 - pir\|\|G83565 probable bacteriophage protein PA0638 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9946514, gi\|1... - gi\|9946514\|gb\|AAG04027.1\|AE004499_6 probable bacteriophage protein [Pseudomonas aeruginosa PAO1], gi...	375.0	[0..2]	[241..3]
gi\|116054367, gi... - gi\|32043831\|ref\|ZP_00141093.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|107099608 - gi\|107099608\|ref\|ZP_01363526.1\| hypothetical protein PaerPA_01000622 [Pseudomonas aeruginosa PACS2] gi\|254243715, gi... - gi\|84324135\|ref\|ZP_00972199.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa 2192], gi\|2542...	375.0	[0..2]	[241..3]
gi\|84318837, gi\|... - gi\|84318837\|ref\|ZP_00967254.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa C3719], gi\|254...	374.0	[0..2]	[241..3]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSADIQTLE PGNEIILYEI DGTAFGADIL RFHAHNIPYS ETDLNQPNLP ARIIHWQGEQ  60
   61 YSAWPAQLEG VEVNSDGSPS TPTLTVANID GSISALCLYF QNMEQAKVTI HRTLAKYLDA 120
  121 ANFHTGNSEA DPTQEAVEIW YVDKKVNEDN VAVTFELSNP ADLSGYKIGR QMTAYCYWCQ 180
  181 RGEYRGADCG YTGEAMFTDE DQPTDNPALD QCSGTIKGCT LRFGENNELP HGGFPSVRLI 240
  241 R

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits