YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374474, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374474, gi|....

Description	E-value	Query Range	Subject Range
gi\|15831240, gi\|... - gi\|15831240\|ref\|NP_310013.1\| putative tail assembly protein [Escherichia coli O157:H7], gi\|13361451\|... gi\|217329431, gi... - gi\|217329431\|ref\|ZP_03445511.1\| tail assembly protein [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|15831240, gi\|... - gi\|15831240\|ref\|NP_310013.1\| putative tail assembly protein [Escherichia coli O157:H7 str. Sakai], g... gi\|189404247, gi... - gi\|189404247\|ref\|ZP_03007382.1\| tail assembly protein [Escherichia coli O157:H7 str. EC4501], gi\|189... gi\|25301891 - pir\|\|B90877 probable tail assembly protein [imported] - Escherichia coli (strain O157:H7, substrain ...	229.0	[0..4]	[236..3]
gi\|75255279 - gi\|75255279\|ref\|ZP_00727117.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	229.0	[0..4]	[236..3]
gi\|71794525, gi\|... - gi\|71794525\|emb\|CAD88871.2\| putative tail fiber component [Phage BP-4795], gi\|157166055\|ref\|YP_00144...	229.0	[0..4]	[236..49]
gi\|51773732 - gi\|51773732\|emb\|CAH23257.1\| putative tail fiber component K [Bacteriophage CP-1639]	229.0	[0..4]	[236..3]
gi\|91210537, gi\|... - gi\|91210537\|ref\|YP_540523.1\| putative tail fiber component K of prophage [Escherichia coli UTI89], g... gi\|218365001, gi... - gi\|218558232\|ref\|YP_002391145.1\| putative tail fiber component K of prophage [Escherichia coli S88],...	229.0	[0..4]	[237..17]
gi\|193071268, gi... - gi\|75233803\|ref\|ZP_00718280.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	229.0	[0..4]	[236..3]
gi\|81245127, gi\|... - gi\|82543716\|ref\|YP_407663.1\| tail assembly protein [Shigella boydii Sb227], gi\|81245127\|gb\|ABB65835....	229.0	[0..4]	[236..28]
gi\|110342957, gi... - gi\|110641365\|ref\|YP_669095.1\| tail assembly protein K [Escherichia coli 536], gi\|110342957\|gb\|ABG691... gi\|75239669 - gi\|75239669\|ref\|ZP_00723636.1\| COG0791: Cell wall-associated hydrolases (invasion-associated protein...	228.0	[0..4]	[236..3]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQTILHAFS QHAASCYPNE CCGLLIRQGN KAQYVKCENK ATNKADEFVI DPQQYADIEE  60
   61 LGAIIGICHS HPDASSKPSD RDRAMCEASG LPWHILSWPD GDLRTIVPTG ERKSLLNRPF 120
  121 VHGVWDCYSC VRDWYSEVQQ IHLPDFARQD GWWEGEQELY LDNFAKAGFV ALPNINLADL 180
  181 QIGDVFLMQI QSQRVNHAAV YVGEGKILHH LYGRLSRYDI YGGYWQRNTR LIVRHCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2hbwA
Description:	No description for 2hbwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits