YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349046, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349046, gi|....

Description	E-value	Query Range	Subject Range
gi\|11875085\|dbj\|... - tail assembly protein I [Escherichia coli O157:H7] gi\|195937901 - gi\|195937901\|ref\|ZP_03083283.1\| putative tail assembly protein [Escherichia coli O157:H7 str. EC4024... gi\|25301905, gi\|... - pir\|\|A98969 probable tail assembly protein [imported] - Escherichia coli (strain O157:H7, substrain ... gi\|15831416, gi\|... - gi\|15832199\|ref\|NP_310972.1\| putative tail assembly protein [Escherichia coli O157:H7 str. Sakai], g... gi\|11875085, gi\|... - gi\|15832199\|ref\|NP_310972.1\| putative tail assembly protein [Escherichia coli O157:H7], gi\|15831975\|...	261.0	[0..4]	[200..14]
gi\|76556246, gi\|... - gi\|76556246\|emb\|CAD88872.2\| putative tail component [Phage BP-4795], gi\|157166056\|ref\|YP_001449308.1...	260.0	[0..4]	[199..14]
gi\|91075651, gi\|... - gi\|91214077\|ref\|YP_544063.1\| putative tail component of prophage CP-933K [Escherichia coli UTI89], g...	260.0	[0..4]	[199..14]
gi\|15801581, gi\|... - gi\|15801581\|ref\|NP_287598.1\| putative tail component of prophage CP-933O [Escherichia coli O157:H7 E... gi\|25301911 - pir\|\|F85718 probable tail component of prophage CP-933O Z2144 [imported] - Escherichia coli (strain ...	260.0	[0..4]	[200..14]
gi\|120599314, gi... - gi\|82743846\|ref\|ZP_00906465.1\| prophage LambdaSo, tail assembly protein I [Shewanella sp. W3-18-1], ...	259.0	[0..2]	[209..31]
gi\|26248997, gi\|... - gi\|26248997\|ref\|NP_755037.1\| putative tail component of prophage [Escherichia coli CFT073], gi\|26109...	257.0	[0..4]	[199..1]
gi\|115512760, gi... - gi\|117623636\|ref\|YP_852549.1\| putative tail component of prophage [Escherichia coli APEC O1], gi\|115...	256.0	[0..4]	[199..14]
gi\|169257217 - gi\|169257217\|ref\|YP_001700594.1\| bacteriophage tail tip assembly protein; Lambda gpI homolog [Phage ... gi\|16421139, gi\|... - gi\|16765911\|ref\|NP_461526.1\| tail assembly protein I-like [Salmonella typhimurium LT2], gi\|16421139\|... lcl\|NC_016856.1_... - [gene=STM14_3173] [protein=tail assembly protein I-like protein] [protein_id=YP_005238700.1] [locati...	256.0	[0..4]	[199..14]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHTTIKLS GSLASRFGRV HQRLLETGTT TEAFSALKNT LQGFELFIKE QAKLGLRYAI  60
   61 FRNGRNTGMD EFELAGTNEI RIVPVISGSK RGGILQTILG AVMIVVGAYF GQGWLVQAGV 120
  121 GLVAGGVVQM LSPQAKGLNG REAAENAPSY AFGGAVNTTA AGNPVGIGYG KRRIGGAIIS 180
  181 AGIYAEDIAT SKRPIQSGGG NGNGNQQEP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	1v8cA
Description:	Crystal Structure of MoaD related protein from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.25914852926474	bayes_pls_golite062009
protein binding	0.441549336484559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: