YRC Public Data Repository - Protein Structure Prediction

Protein:	ACKA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACKA_SHEON.

Description	E-value	Query Range	Subject Range
ACKA_THEMA - Acetate kinase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=ackA PE=1... ACKA_THEMA - Acetate kinase OS=Thermotoga maritima GN=ackA PE=1 SV=1	599.0	[0..5]	[399..2]
ACKA_CARHZ - Acetate kinase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901) GN=ack...	595.0	[0..5]	[397..2]
ACKA_CLOTM - Acetate kinase (EC 2.7.2.1) (Acetokinase) - Clostridium thermocellum ACKA_CLOTH - Acetate kinase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 / NCIMB 10682... gi\|196196580, gi... - gi\|196254012\|ref\|ZP_03152607.1\| acetate kinase [Clostridium thermocellum DSM 4150], gi\|196196580\|gb\|...	592.0	[0..6]	[397..3]
ACKA_DESHD - Acetate kinase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=ackA PE=3 SV=1	590.0	[0..5]	[399..2]
ACKA_DESHY - Acetate kinase OS=Desulfitobacterium hafniense (strain Y51) GN=ackA PE=3 SV=1	589.0	[0..5]	[399..2]
ACKA_THETC - Acetate kinase OS=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 938... gi\|3006124 - gi\|3006124\|emb\|CAA06175.1\| acetate kinase [Thermoanaerobacterium thermosaccharolyticum]	589.0	[0..5]	[398..2]
ACKA_GEOKA - Acetate kinase OS=Geobacillus kaustophilus (strain HTA426) GN=ackA PE=3 SV=1 ACKA_GEOKA - Acetate kinase OS=Geobacillus kaustophilus GN=ackA PE=3 SV=1	588.0	[0..5]	[398..3]
ACKA_TREDE - Acetate kinase OS=Treponema denticola GN=ackA PE=3 SV=1 ACKA_TREDE - Acetate kinase OS=Treponema denticola (strain ATCC 35405 / CIP 103919 / DSM 14222) GN=ackA PE=3 SV=1	586.0	[0..5]	[397..2]
ACKA_BACCN - Acetate kinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=ackA...	583.0	[0..1]	[396..1]

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Predicted Domain #1

Region A:
Residues: [1-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLVLVLN CGSSSLKFAV IDAQTGDDQI SGLAECFGLE DSRIKWKING EKHESSLGAF  60
   61 TAHREAVEFI VNKILAGQPE LAAQIQAVGH RIVHGGEKFT RSVIIDEHVI KGIEECSSLA 120
  121 PLHNPAHLIG IRAAMASFPK LPQVAVFDTA FHQSMPERSF IYALPYKLYR EHGIRRYGMH 180
  181 GTSHLFVSRE AAKVLKKPLA ETNVICAHLG NGASVTAVKG GKSVDTSMGL TPLEGLVMGT 240
  241 RCGDIDPSII YHLVHQLGYT LEEVNNLMNK QSGLLGISEL TNDCRGIEEG YADGHKGATL 300
  301 ALEIFCYRLA KYIASYTVPL GRLDAVVFTG GIGENSDIIR EKVLNMLQIF NFHVDSERNK 360
  361 AARFGKKGII TADNSTVAMV IPTNEEWVIA EDSIKLITK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	172.0
Match:	2iirA
Description:	No description for 2iirA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits