YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349014, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349014, gi|....

Description	E-value	Query Range	Subject Range
gi\|227838883, gi... - gi\|227884131\|ref\|ZP_04001936.1\| formate transporter [Escherichia coli 83972], gi\|227838883\|gb\|EEJ493... gi\|117623122, gi... - gi\|117623122\|ref\|YP_852035.1\| formate transporter [Escherichia coli APEC O1], gi\|115512246\|gb\|ABJ003... gi\|226898318, gi... - gi\|237707108\|ref\|ZP_04537589.1\| formate transporter [Escherichia sp. 3_2_53FAA], gi\|226898318\|gb\|EEH... gi\|26246929, gi\|... - gi\|26246929\|ref\|NP_752969.1\| formate transporter [Escherichia coli CFT073], gi\|26107329\|gb\|AAN79512.... gi\|110641101, gi... - gi\|110641101\|ref\|YP_668831.1\| formate transporter [Escherichia coli 536], gi\|110342693\|gb\|ABG68930.1... gi\|91071579, gi\|... - gi\|91210005\|ref\|YP_539991.1\| formate transporter [Escherichia coli UTI89], gi\|91071579\|gb\|ABE06460.1...	344.0	[0..5]	[297..106]
gi\|110614460, gi... - gi\|110804912\|ref\|YP_688432.1\| formate transporter [Shigella flexneri 5 str. 8401], gi\|110614460\|gb\|A... gi\|24112312, gi\|... - ref\|NP_706822.1\| probable formate transporter (formate channel 1) [Shigella flexneri 2a str. 301], ...	339.0	[0..5]	[297..51]
gi\|62127131, gi\|... - gi\|62179498\|ref\|YP_215915.1\| formate transporter [Salmonella enterica subsp. enterica serovar Choler...	339.0	[0..5]	[297..33]
gi\|27358250, gi\|... - gi\|27366684\|ref\|NP_762211.1\| CBS domain-containing protein [Vibrio vulnificus CMCP6], gi\|27358250\|gb...	327.0	[0..20]	[313..10]
gi\|37200939, gi\|... - gi\|37676397\|ref\|NP_936793.1\| putative formate transporter 1 [Vibrio vulnificus YJ016], gi\|37200939\|d...	327.0	[0..20]	[313..10]
gi\|238789325, gi... - gi\|77974841\|ref\|ZP_00830379.1\| COG2116: Formate/nitrite family of transporters [Yersinia frederiksen...	325.0	[0..14]	[297..2]
gi\|260364278\|ref... - putative formate transporter 1 [Vibrio parahaemolyticus K5030] gi\|260877641\|ref... - putative formate transporter 1 [Vibrio parahaemolyticus AN-5034] gi\|28809086, gi\|... - gi\|28900706\|ref\|NP_800361.1\| putative formate transporter 1 [Vibrio parahaemolyticus RIMD 2210633], ... gi\|28809086 - gi\|28809086\|dbj\|BAC62194.1\| putative formate transporter 1 [Vibrio parahaemolyticus RIMD 2210633]	325.0	[0..9]	[313..2]
gi\|90412848, gi\|... - gi\|90412848\|ref\|ZP_01220848.1\| hypothetical formate transporter 1 [Photobacterium profundum 3TCK], g...	324.0	[0..9]	[314..2]
gi\|238720308, gi... - gi\|77963087\|ref\|ZP_00826900.1\| COG2116: Formate/nitrite family of transporters [Yersinia mollaretii ...	324.0	[0..14]	[297..2]
gi\|121591463, gi... - gi\|121591463\|ref\|ZP_01678737.1\| formate transporter 1, putative [Vibrio cholerae 2740-80], gi\|121546... gi\|153224824, gi... - gi\|153224824\|ref\|ZP_01954608.1\| formate transporter 1, putative [Vibrio cholerae MAK 757], gi\|124117... gi\|254849702, gi... - gi\|75831456\|ref\|ZP_00760719.1\| COG2116: Formate/nitrite family of transporters [Vibrio cholerae MO10... gi\|126509277, gi... - gi\|153820175\|ref\|ZP_01972842.1\| formate transporter 1, putative [Vibrio cholerae NCTC 8457], gi\|1265... gi\|262151207\|ref... - formate efflux transporter [Vibrio cholerae INDRE 91/1] gi\|255746681\|ref... - formate efflux transporter [Vibrio cholera CIRS 101] gi\|15601299, gi\|... - gi\|9657947\|gb\|AAF96442.1\| formate transporter 1, putative [Vibrio cholerae O1 biovar eltor str. N169... gi\|11355899 - pir\|\|D82446 probable formate transporter 1 VCA0540 [imported] - Vibrio cholerae (strain N16961 serog... gi\|227011251, gi... - gi\|227812109\|ref\|YP_002812119.1\| putative formate transporter 1 [Vibrio cholerae M66-2], gi\|22701125... gi\|229506289, gi... - gi\|229506289\|ref\|ZP_04395798.1\| formate efflux transporter [Vibrio cholerae BX 330286], gi\|229356640... gi\|229509592, gi... - gi\|229509592\|ref\|ZP_04399074.1\| formate efflux transporter [Vibrio cholerae B33], gi\|229353542\|gb\|EE... gi\|229346468, gi... - gi\|229516587\|ref\|ZP_04406034.1\| formate efflux transporter [Vibrio cholerae RC9], gi\|229346468\|gb\|EE... gi\|229605839, gi... - gi\|229605839\|ref\|YP_002876543.1\| formate efflux transporter [Vibrio cholerae MJ-1236], gi\|229372325\|...	324.0	[0..22]	[313..12]

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Predicted Domain #1

Region A:
Residues: [1-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDSHSNASQ ASANGHESVP VSSHFSCYYQ AEIYGKSKVV KAPWQSFGLA VFAGAFIALA  60
   61 FVFYLTVTTG AGDSAWGLVR LVGGIAFSLG LILVVICGGE LFTSSVLSSV AWAQKQVTTS 120
  121 ELLKCWTRVY LGNFVGAMLM VGLIMAAGLY ELDGGNWGLN ALKVAQHKLH HTWIQAFSLG 180
  181 ILCNMLVCLG IWMTFASRES LTKAILLILP VAMFVSSGFE HSIANLFMVP FGITIQAVAS 240
  241 PEFFASLGVT QEQFADLTVA NFIFKNLIPV TLGNIVGGGV IVGLGYWWIE QGQIALPDPQ 300
  301 KSHQPHFFAS PLHTEKVKKS QESK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.56
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits