YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24349003, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24349003, gi|....

Description	E-value	Query Range	Subject Range
gi\|186465829, gi... - gi\|23126914\|ref\|ZP_00108795.1\| COG3321: Polyketide synthase modules and related proteins [Nostoc pun...	280.0	[0..5]	[327..41]
gi\|53765235, gi\|... - gi\|75910938\|ref\|YP_325234.1\| Beta-ketoacyl synthase [Anabaena variabilis ATCC 29413], gi\|75704663\|gb...	276.0	[0..4]	[327..1]
gi\|28976142 - gi\|28976142\|gb\|AAO64407.1\| NdaF [Nodularia spumigena]	274.0	[0..6]	[327..35]
gi\|17229141, gi\|... - gi\|17229141\|ref\|NP_485689.1\| hypothetical protein all1649 [Nostoc sp. PCC 7120], gi\|17135469\|dbj\|BAB... gi\|25320151 - pir\|\|AC2012 hypothetical protein all1649 [imported] - Nostoc sp. (strain PCC 7120)	273.0	[0..4]	[327..1]
gi\|19880035 - gi\|19880035\|gb\|AAM00231.1\|AF358431_1 root-specific chalcone synthase [Senna alata]	271.0	[0..1]	[339..22]
gi\|31616730, gi\|... - gi\|31616730\|emb\|CAD60097.1\| polyketide synthase peptide synthetase fusion protein [Anabaena circinal...	271.0	[0..5]	[327..34]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLENAGLI EQGHVEALSY SSCEFIEKAS GIKHRYVMVK EGILDPEVMM PLIPERSSDE  60
   61 LSMQAEIGVE AALMALKQAE LKAEQIDLVI VACAYTQRAY PAMAIEIQRA LGTRGYGYDM 120
  121 QVACSSATFA IVAAANAIAT GSASRVLVIN PEICSAQVNY RDRDSHFIFG DVATAVVLEE 180
  181 QSLVAPNKGF TILSSRCFTD YSNNIRSNFG FLNRCDPSSA HQADKLFHQQ GRKVFKELLP 240
  241 MIYQHLDEHL AEQSLTPQSF KRLWLHQANI NMNLFVVKKL LGDEVAPEQA PVVLDEYANT 300
  301 ASAGSVIAFH QYSADFNAGD LGLLSSFGAG YSIGSVILQK R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1zowA
Description:	Crystal Structure of S. aureus FabH, beta-ketoacyl carrier protein synthase III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits