YRC Public Data Repository - Protein Structure Prediction

Protein:	NHAB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	533 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NHAB_SHEON.

Description	E-value	Query Range	Subject Range
NHAB_SHESA - Na(+)/H(+) antiporter NhaB OS=Shewanella sp. (strain ANA-3) GN=nhaB PE=3 SV=1	276.0	[0..1]	[533..1]
NHAB_PHOPR - Na(+)/H(+) antiporter NhaB OS=Photobacterium profundum GN=nhaB PE=3 SV=1 NHAB_PHOPR - Na(+)/H(+) antiporter NhaB OS=Photobacterium profundum (strain SS9) GN=nhaB PE=3 SV=1	266.0	[0..1]	[533..1]
NHAB_SHESM - Na(+)/H(+) antiporter NhaB OS=Shewanella sp. (strain MR-4) GN=nhaB PE=3 SV=1 NHAB_SHESR - Na(+)/H(+) antiporter NhaB OS=Shewanella sp. (strain MR-7) GN=nhaB PE=3 SV=1	266.0	[0..1]	[533..1]
gi\|68543210, gi\|... - gi\|68543210\|ref\|ZP_00582923.1\| Na+/H+ antiporter NhaB [Shewanella baltica OS155], gi\|68519116\|gb\|EAN...	263.0	[0..1]	[533..1]
gi\|90328442, gi\|... - gi\|90410811\|ref\|ZP_01218826.1\| putative Na+/H+-exchanging protein [Photobacterium profundum 3TCK], g...	261.0	[0..1]	[531..1]
gi\|89073259, gi\|... - gi\|89073259\|ref\|ZP_01159789.1\| putative Na+/H+-exchanging protein [Photobacterium sp. SKA34], gi\|890...	260.0	[0..1]	[533..1]
NHAB_VIBVY - Na(+)/H(+) antiporter NhaB OS=Vibrio vulnificus (strain YJ016) GN=nhaB PE=3 SV=1	259.0	[0..1]	[533..1]
NHAB_VIBVU - Na(+)/H(+) antiporter NhaB OS=Vibrio vulnificus (strain CMCP6) GN=nhaB PE=3 SV=1 NHAB_VIBVU - Na(+)/H(+) antiporter nhaB OS=Vibrio vulnificus GN=nhaB PE=3 SV=1	259.0	[0..1]	[533..1]
gi\|90579248, gi\|... - gi\|90579248\|ref\|ZP_01235058.1\| putative Na+/H+-exchanging protein [Vibrio angustum S14], gi\|90440081...	259.0	[0..1]	[533..1]
NHAB_SHEPC - Na(+)/H(+) antiporter NhaB OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=nhaB PE=3 SV=...	256.0	[0..1]	[533..1]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMTMSQAFI GNFLGNSPKW YKIAILSFLI INPILFFYVS PFVAGWVLVL EFIFTLAMAL  60
   61 KCYPLQPGGL LAIEAVAIGM TSASQVLHEI EANLEVLLLL VFMVAGIYFM KQLLLFAFTK 120
  121 MITKVRSKIL VSLLFCLASA FLSAFLDALT VIAVIITVAV GFYSIYHKVA SGKDFSADHD 180
  181 HTSENKNEEG EDQLNEAELE SFRGFLRNLL MHAGVGTALG GVCTMVGEPQ NLIIAAQANW 240
  241 QFGEFAIRMS PVTVPVFIAG ILTCYIVEKF RIF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [274-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GYGAQLPDAV HKILCDYDAH EDARRTNKDK MKLIVQAFIG VWLIAGLALH LASVGLIGLS  60
   61 VIILATAFNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [344-533]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITDEHALGKA FEEALPFTAL LAVFFSVVAV IIDQQLFAPV IQWALNHEGN TQLVIFYIAN  60
   61 GLLSMVSDNV FVGTVYINEV KAALLNGQIT RDQFDLLAVA INTGTNLPSV ATPNGQAAFL 120
  121 FLLTSALAPL IRLSYGRMVW MALPYTIVLS IVGVMAIQIG FLEQMTQYFY DSHAILHHSV 180
  181 KEALAPATGH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.741	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.658	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.621	N/A	N/A	a.1.1	Globin-like
View	Download	0.539	N/A	N/A	a.63.1	Apolipophorin-III
View	Download	0.523	N/A	N/A	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits