YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348954, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348954, gi|....

Description	E-value	Query Range	Subject Range
gi\|82737393, gi\|... - gi\|82737393\|ref\|ZP_00900243.1\| thiol:disulfide interchange protein, DsbA family [Pseudomonas putida ... tr\|I7CBH6\|I7CBH6... - Thiol:disulfide interchange protein OS=Pseudomonas putida (strain DOT-T1E) GN=dsbA PE=3 SV=1	161.0	[0..1]	[207..1]
gi\|24981474, gi\|... - gi\|26986872\|ref\|NP_742297.1\| DsbA family thiol:disulfide interchange protein [Pseudomonas putida KT2...	161.0	[0..1]	[207..1]
gi\|94417202, gi\|... - gi\|94417202\|ref\|ZP_01297021.1\| hypothetical protein PaerP_01000998 [Pseudomonas aeruginosa PA7], gi\|...	160.0	[0..1]	[207..1]
gi\|1814074\|gb\|AA... - DsbA [Pseudomonas aeruginosa] gi\|4545238, gi\|1... - gi\|4545238\|gb\|AAD22452.1\|AF116282_1 thiol:disulfide interchange protein DsbA precursor [Pseudomonas ...	158.0	[0..1]	[207..1]
gi\|107104591 - gi\|107104591\|ref\|ZP_01368509.1\| hypothetical protein PaerPA_01005670 [Pseudomonas aeruginosa PACS2] gi\|254237830, gi... - gi\|84318093\|ref\|ZP_00966522.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Pseudomonas aeru... DSBA_PSEAB - Thiol:disulfide interchange protein DsbA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=dsbA PE=3 ... gi\|218894592, gi... - gi\|218894592\|ref\|YP_002443462.1\| thiol:disulfide interchange protein DsbA [Pseudomonas aeruginosa LE... DSBA_PSEAE - Thiol:disulfide interchange protein DsbA OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / ... DSBA_PSEAE - Thiol:disulfide interchange protein dsbA OS=Pseudomonas aeruginosa GN=dsbA PE=1 SV=1	157.0	[0..1]	[207..1]
gi\|49079260 - gi\|49079260\|gb\|AAT49872.1\| PA5489 [synthetic construct]	156.0	[0..1]	[207..1]
gi\|104779393, gi... - gi\|95108380\|emb\|CAK13074.1\| thiol:disulfide interchange protein, periplasmic, alkali-inducible [Pseu... gi\|95108380 - gi\|95108380\|emb\|CAK13074.1\| thiol:disulfide interchange protein, periplasmic, alkali-inducible [Pseu...	156.0	[0..1]	[207..1]
gi\|67154996, gi\|... - gi\|67154996\|ref\|ZP_00416741.1\| DSBA oxidoreductase [Azotobacter vinelandii AvOP], gi\|67089129\|gb\|EAM... DSBA_AZOVI - Thiol:disulfide interchange protein DsbA OS=Azotobacter vinelandii GN=dsbA PE=3 SV=1	156.0	[0..1]	[207..1]
gi\|2707768 - gi\|2707768\|gb\|AAB92367.1\| disulfide oxidoreductase [Pseudomonas syringae] gi\|213924254, gi... - gi\|213971018\|ref\|ZP_03399139.1\| thiol:disulfide interchange protein DsbA [Pseudomonas syringae pv. t... DSBA_PSESM - Thiol:disulfide interchange protein DsbA OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dsbA ... DSBA_PSESM - Thiol:disulfide interchange protein dsbA OS=Pseudomonas syringae pv. tomato GN=dsbA PE=3 SV=1	155.0	[0..1]	[207..1]
gi\|113888526, gi... - gi\|114047084\|ref\|YP_737634.1\| DSBA oxidoreductase [Shewanella sp. MR-7], gi\|113888526\|gb\|ABI42577.1\|...	153.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSLINVVRP WVAMACGLVL SASFTLQAAS FEEGKDYVTV TGISEAQKPI LREFFSYNCP  60
   61 HCYKQEPFVA STVKLLGKNV AFERTPVGVG RPAWELSQLA YYVAQKLNMT KQVHEAIFKQ 120
  121 IHEKGEQFTR PEQVKAFFVA QGAKADDVDA AMNSVDAKFS MMNYDSQAEL AGIKGVPSLL 180
  181 VNGRYLVTSQ VHTPEELAEL VKYLAAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2ijyA
Description:	No description for 2ijyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits