YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374382, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	354 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374382, gi|....

Description	E-value	Query Range	Subject Range
gi\|78506247, gi\|... - gi\|78685932\|ref\|ZP_00850705.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella sp...	272.0	[0..1]	[354..1]
gi\|78691735, gi\|... - gi\|78691735\|ref\|ZP_00856333.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella sp... gi\|82403680, gi\|... - gi\|82498311\|ref\|ZP_00883815.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella sp...	271.0	[0..1]	[354..1]
gi\|153001186, gi... - gi\|153001186\|ref\|YP_001366867.1\| 3-oxoacyl-(acyl carrier protein) synthase III [Shewanella baltica O... gi\|217972892, gi... - gi\|217972892\|ref\|YP_002357643.1\| 3-oxoacyl-(acyl carrier protein) synthase III [Shewanella baltica O... gi\|126174847, gi... - gi\|68544128\|ref\|ZP_00583799.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella ba... gi\|160861381, gi... - gi\|160875859\|ref\|YP_001555175.1\| 3-oxoacyl-(acyl carrier protein) synthase III [Shewanella baltica O...	267.0	[0..1]	[354..1]
gi\|124508264, gi... - gi\|124548799\|ref\|ZP_01707324.1\| 3-oxoacyl-(acyl-carrier-protein) synthase III [Shewanella putrefacie... gi\|82743288, gi\|... - gi\|82743288\|ref\|ZP_00905943.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella sp... gi\|146293451, gi... - gi\|77815039\|ref\|ZP_00814284.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella pu...	267.0	[0..1]	[353..1]
gi\|68513948, gi\|... - gi\|68548350\|ref\|ZP_00587858.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella am...	264.0	[0..1]	[354..1]
gi\|78368815, gi\|... - gi\|78368815\|ref\|ZP_00839018.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella sp...	260.0	[0..1]	[353..1]
gi\|29827480, gi\|... - gi\|29827480\|ref\|NP_822114.1\| type I polyketide synthase AVES 2 [Streptomyces avermitilis MA-4680], g... gi\|5902892 - gi\|5902892\|dbj\|BAA84475.1\| type I polyketide synthase AVES 2 [Streptomyces avermitilis]	256.0	[0..13]	[349..2733]
gi\|69156541, gi\|... - gi\|91792739\|ref\|YP_562390.1\| 3-oxoacyl-(acyl carrier protein) synthase III [Shewanella denitrificans...	256.0	[0..1]	[354..1]
gi\|114334019, gi... - gi\|69952406\|ref\|ZP_00639901.1\| Beta-ketoacyl-acyl carrier protein synthase III (FabH) [Shewanella fr...	255.0	[0..1]	[352..1]
FABH_CLOAB - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Clostridium acetobutylicum GN=fabH PE=3 SV=1 FABH_CLOAB - 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792...	251.0	[0..1]	[321..1]

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Predicted Domain #1

Region A:
Residues: [1-354]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYATITGWG KCVPPATLTN DDLATFIETS DEWIKSRTGI SQRHISHVNT SELASVAAKR  60
   61 ALAAAGIEGS EIDMIILASA SPDTLIPNIA STVQANIGAN CAAFDINAAC SGFLYGLGLA 120
  121 SSQIKSGQCK KVLVVGAERL SFYLDWSRRE TAVLFGDGAG AVVVEATDIP GGVLGYELNN 180
  181 DPDGRDILKA GFGTAMDRFS ADSLDFYIQF DGQEIFKRAI NGMNKLSTQV LEKCGVDKDE 240
  241 VDLVIPHQAN ERIIDTLVSR MKIPKEKAFV NIANYGNTSA ATIPIAICDA LEKGLIKPNQ 300
  301 TILSCAFGAG LTSAALLLQW GERVTPVQIS DAQLPPCDQS GIELVKRAVD YFCK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2ebdA
Description:	No description for 2ebdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits