YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348919, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348919, gi|....

Description	E-value	Query Range	Subject Range
gi\|78509911, gi\|... - gi\|78690684\|ref\|ZP_00855325.1\| Radical-activating enzyme [Shewanella sp. MR-7], gi\|78509911\|gb\|EAP23...	143.0	[0..1]	[153..1]
NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae serotype O1 (s... gi\|153825853, gi... - gi\|153825853\|ref\|ZP_01978520.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|254845380, gi... - gi\|75830585\|ref\|ZP_00759860.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae MO10], g... gi\|116216435, gi... - gi\|75823225\|ref\|ZP_00752743.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae RC385], ... gi\|121726072, gi... - gi\|75816710\|ref\|ZP_00747172.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V52], gi... gi\|121549301, gi... - gi\|121586476\|ref\|ZP_01676263.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|153220897, gi... - gi\|153220897\|ref\|ZP_01951979.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|227011224, gi... - gi\|227812082\|ref\|YP_002812092.1\| anaerobic ribonucleoside-triphosphate reductase activating protein ... NRDG_VIBCH - Anaerobic ribonucleoside-triphosphate reductase-activating protein OS=Vibrio cholerae GN=nrdG PE=3 S... gi\|153819577, gi... - gi\|153819577\|ref\|ZP_01972244.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [... gi\|229356667, gi... - gi\|229506316\|ref\|ZP_04395825.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229509564, gi... - gi\|229509564\|ref\|ZP_04399046.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229346496, gi... - gi\|229516615\|ref\|ZP_04406062.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229523014, gi... - gi\|229523014\|ref\|ZP_04412426.1\| ribonucleotide reductase of class III (anaerobic) activating protein... gi\|229605867, gi... - gi\|229605867\|ref\|YP_002876571.1\| ribonucleotide reductase of class III (anaerobic) activating protei...	142.0	[0..1]	[153..1]
gi\|227015435, gi... - gi\|75825338\|ref\|ZP_00754774.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae O395], g...	141.0	[0..1]	[153..1]
gi\|116220532, gi... - gi\|75819831\|ref\|ZP_00749895.1\| COG0602: Organic radical activating enzymes [Vibrio cholerae V51], gi...	141.0	[0..1]	[153..1]
gi\|113970775, gi... - gi\|82497493\|ref\|ZP_00883032.1\| Radical-activating enzyme [Shewanella sp. MR-4], gi\|82404522\|gb\|EAP45...	140.0	[0..1]	[153..1]
gi\|116186684, gi... - gi\|75857559\|ref\|ZP_00765173.1\| COG0602: Organic radical activating enzymes [Vibrio sp. Ex25], gi\|116... gi\|28809241, gi\|... - gi\|28900795\|ref\|NP_800450.1\| anaerobic ribonucleotide reductase-activating protein [Vibrio parahaemo... gi\|28809241 - gi\|28809241\|dbj\|BAC62283.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [Vibr...	140.0	[0..1]	[153..1]
gi\|91189329, gi\|... - gi\|91226095\|ref\|ZP_01260985.1\| anaerobic ribonucleoside-triphosphate reductase activating protein [V...	139.0	[0..1]	[153..1]
gi\|117613375, gi... - gi\|78686805\|ref\|ZP_00851567.1\| Radical-activating enzyme [Shewanella sp. ANA-3], gi\|78505438\|gb\|EAP1...	139.0	[0..1]	[153..1]
gi\|50119333, gi\|... - gi\|50119333\|ref\|YP_048500.1\| anaerobic ribonucleotide reductase-activating protein [Pectobacterium a...	139.0	[0..1]	[153..1]
gi\|120599362, gi... - gi\|82741120\|ref\|ZP_00903848.1\| Radical-activating enzyme [Shewanella sp. W3-18-1], gi\|82721492\|gb\|EA... gi\|77809397, gi\|... - gi\|77815662\|ref\|ZP_00814887.1\| Formate acetyltransferase activating enzyme [Shewanella putrefaciens ...	137.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYQQYYPVD VVNGPGTRAT LFVSGCEHQC RGCYNQSTWD VRSGHLFDKA MEDNIIADLQ  60
   61 DLRIVRRGLS LSGGDPLLPA NLEGILALVK RVKAECPGKD IWLWTGYVWD ELSDEQRAVL 120
  121 KYVDVLVDGK FEQNLADPSL PYRGSSNQVI RFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	1r30A
Description:	The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits