YRC Public Data Repository - Protein Structure Prediction

Protein:	LPXK_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LPXK_SHEON.

Description	E-value	Query Range	Subject Range
gi\|53732607 - gi\|53732607\|ref\|ZP_00154789.2\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Haemophilus influenzae ...	460.0	[0..7]	[326..2]
gi\|145639652, gi... - gi\|145639652\|ref\|ZP_01795255.1\| tetraacyldisaccharide 4'-kinase [Haemophilus influenzae PittII], gi\|... gi\|144978581, gi... - gi\|145629078\|ref\|ZP_01784877.1\| tetraacyldisaccharide 4'-kinase [Haemophilus influenzae 22.1-21], gi... gi\|46133687 - gi\|46133687\|ref\|ZP_00157566.2\| COG1663: Tetraacyldisaccharide-1-P 4'-kinase [Haemophilus influenzae ...	459.0	[0..7]	[325..2]
LPXK_SHESM - Tetraacyldisaccharide 4'-kinase OS=Shewanella sp. (strain MR-4) GN=lpxK PE=3 SV=1	458.0	[0..1]	[335..1]
LPXK_SHESA - Tetraacyldisaccharide 4'-kinase OS=Shewanella sp. (strain ANA-3) GN=lpxK PE=3 SV=1	458.0	[0..1]	[335..1]
LPXK_SHESR - Tetraacyldisaccharide 4'-kinase OS=Shewanella sp. (strain MR-7) GN=lpxK PE=3 SV=1	457.0	[0..1]	[335..1]
LPXK_HAEIN - Tetraacyldisaccharide 4'-kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd... LPXK_HAEIN - Tetraacyldisaccharide 4'-kinase OS=Haemophilus influenzae GN=lpxK PE=3 SV=1	456.0	[0..7]	[325..2]
LPXK_HAEI8 - Tetraacyldisaccharide 4'-kinase OS=Haemophilus influenzae (strain 86-028NP) GN=lpxK PE=3 SV=1	452.0	[0..7]	[326..2]
gi\|124548281, gi... - gi\|124548281\|ref\|ZP_01706999.1\| tetraacyldisaccharide 4'-kinase [Shewanella putrefaciens 200], gi\|12... LPXK_SHESW - Tetraacyldisaccharide 4'-kinase OS=Shewanella sp. (strain W3-18-1) GN=lpxK PE=3 SV=1 LPXK_SHEPC - Tetraacyldisaccharide 4'-kinase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=lpxK PE=...	451.0	[0..1]	[335..1]
LPXK_PASMU - Tetraacyldisaccharide 4'-kinase OS=Pasteurella multocida GN=lpxK PE=3 SV=1 LPXK_PASMU - Tetraacyldisaccharide 4'-kinase OS=Pasteurella multocida (strain Pm70) GN=lpxK PE=3 SV=1	450.0	[0..7]	[326..2]
LPXK_SHEB9 - Tetraacyldisaccharide 4'-kinase OS=Shewanella baltica (strain OS195) GN=lpxK PE=3 SV=1	446.0	[0..1]	[335..1]

Back

Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQALVNKIWY QGHPLRWLLL PLSALFAFIT AFRRSLFRLG IKSQTTLPVP VIVVGNITVG  60
   61 GSGKTPTVIY LIELLRNQGF NPGVISRGYG AQFQGVKVVT VKDAATDVGD EPAMIVARTG 120
  121 VPMVVGAKRV ETAKALLTQF AVDVIICDDG LQHYALGRDI ELVVIDGKRG LGNRNLLPAG 180
  181 PLREGEWRLN QVDFVIVNGG PAVANQYEMQ LRPCAVLPVS PAVTAEFDST QPLVAMAGIG 240
  241 HPARFFETLT QQGYQVALSH SFDDHQAYDK RQLCELAASR PLMMTEKDAV KCRDFAQENW 300
  301 WYLAVDAKLS PQFDQQLLSR LRSVAAAKKG KSHGV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	2p67A
Description:	No description for 2p67A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.31308081280876	bayes_pls_golite062009
binding	0.64910342483548	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: