YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374306, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	596 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374306, gi|....

Description	E-value	Query Range	Subject Range
gi\|110834963, gi... - gi\|110834963\|ref\|YP_693822.1\| acyl-CoA dehydrogenase, putative [Alcanivorax borkumensis SK2], gi\|110...	540.0	[0..1]	[596..1]
gi\|77385391, gi\|... - gi\|77461388\|ref\|YP_350895.1\| Acyl-CoA dehydrogenase-like [Pseudomonas fluorescens Pf0-1], gi\|7738539...	529.0	[0..1]	[596..1]
gi\|50083857, gi\|... - gi\|50083857\|ref\|YP_045367.1\| acyl-CoA dehydrogenase [Acinetobacter sp. ADP1], gi\|49529833\|emb\|CAG675...	527.0	[0..1]	[596..26]
gi\|194562427, gi... - gi\|84362930\|ref\|ZP_00987541.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia dolosa AUO158], gi\|254...	523.0	[0..1]	[596..1]
gi\|77865663, gi\|... - gi\|77955462\|ref\|ZP_00819827.1\| acyl-CoA dehydrogenase, putative [Marinobacter aquaeolei VT8], gi\|778...	522.0	[0..1]	[596..1]
gi\|67636662, gi\|... - gi\|67636662\|ref\|ZP_00435606.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei 10399], gi\|1009... gi\|67642503, gi\|... - gi\|67642503\|ref\|ZP_00441259.1\| acyl-CoA dehydrogenase domain protein [Burkholderia mallei GB8 horse ... gi\|147745230, gi... - gi\|83620956\|ref\|ZP_00931370.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei FMH], gi\|254203... gi\|126449791, gi... - gi\|67647689\|ref\|ZP_00445928.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei NCTC 10247], gi... gi\|147750569, gi... - gi\|83625895\|ref\|ZP_00936123.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei JHU], gi\|254208... gi\|254177110, gi... - gi\|254177110\|ref\|ZP_04883767.1\| acyl-CoA dehydrogenase domain protein [Burkholderia mallei ATCC 1039... gi\|121229504, gi... - gi\|84521835\|ref\|ZP_01008971.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei SAVP1], gi\|1216... gi\|85066574 - gi\|85066574\|ref\|ZP_01027427.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei 10229] gi\|124385804, gi... - gi\|124385804\|ref\|YP_001028292.1\| acyl-CoA dehydrogenase domain-containing protein [Burkholderia mall... gi\|87315267, gi\|... - gi\|87315267\|ref\|ZP_01096297.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia mallei 2002721280], gi... gi\|53724999, gi\|... - gi\|53724999\|ref\|YP_102032.1\| acyl-CoA dehydrogenase domain-containing protein [Burkholderia mallei A... gi\|251767556, gi... - gi\|251767556\|ref\|ZP_02267698.2\| acyl-CoA dehydrogenase domain protein [Burkholderia mallei PRL-20], ...	521.0	[0..1]	[596..1]
gi\|94501688, gi\|... - gi\|94501688\|ref\|ZP_01308203.1\| Acyl-CoA dehydrogenase [Oceanobacter sp. RED65], gi\|94426175\|gb\|EAT11...	521.0	[0..1]	[596..1]
gi\|89092144, gi\|... - gi\|89092144\|ref\|ZP_01165099.1\| acyl-CoA dehydrogenase, putative [Oceanospirillum sp. MED92], gi\|8908...	521.0	[0..1]	[596..1]
gi\|242139797, gi... - gi\|90661995\|ref\|ZP_01249832.1\| hypothetical protein Bpse110_02006286 [Burkholderia pseudomallei 1106... gi\|82532691, gi\|... - gi\|82532691\|ref\|ZP_00891901.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia pseudomallei 1106a], g... gi\|67670090, gi\|... - gi\|99908595\|ref\|ZP_01316264.1\| hypothetical protein Bpse1_03004343 [Burkholderia pseudomallei 1655],... gi\|83676933, gi\|... - gi\|83676933\|ref\|ZP_00938698.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia pseudomallei 406e], gi... gi\|126440782, gi... - gi\|67739068\|ref\|ZP_00489674.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia pseudomallei 668], gi\|... gi\|254219125, gi... - gi\|90292735\|ref\|ZP_01212343.1\| hypothetical protein Bpse17_02002584 [Burkholderia pseudomallei 1710a... gi\|167718152 - gi\|167718152\|ref\|ZP_02401388.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei DM9... gi\|169653514, gi... - gi\|67759822\|ref\|ZP_00498552.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia pseudomallei S13], gi\|... gi\|194511092, gi... - gi\|67757119\|ref\|ZP_00495997.1\| COG1960: Acyl-CoA dehydrogenases [Burkholderia pseudomallei Pasteur],... gi\|225931178, gi... - gi\|226196647\|ref\|ZP_03792227.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei Pak... gi\|237810882, gi... - gi\|237810882\|ref\|YP_002895333.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei MS... gi\|217419388, gi... - gi\|217419388\|ref\|ZP_03450894.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 576... gi\|52208705, gi\|... - gi\|53718291\|ref\|YP_107277.1\| putative acyl-CoA dehydrogenase oxidoreductase protein [Burkholderia ps... gi\|134248700, gi... - gi\|134279500\|ref\|ZP_01766212.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 305... gi\|167822790 - gi\|167822790\|ref\|ZP_02454261.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 9] gi\|76580059, gi\|... - gi\|76810606\|ref\|YP_332270.1\| acyl-CoA dehydrogenase domain-containing protein [Burkholderia pseudoma... gi\|167844365 - gi\|167844365\|ref\|ZP_02469873.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei B72... gi\|167737181 - gi\|167737181\|ref\|ZP_02409955.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 14] gi\|167814314 - gi\|167814314\|ref\|ZP_02445994.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 91] gi\|167909593 - gi\|167909593\|ref\|ZP_02496684.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 112... gi\|167917608 - gi\|167917608\|ref\|ZP_02504699.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei BCC... gi\|167892877 - gi\|167892877\|ref\|ZP_02480279.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei 789... gi\|167901363 - gi\|167901363\|ref\|ZP_02488568.1\| acyl-CoA dehydrogenase domain protein [Burkholderia pseudomallei NCT...	520.0	[0..1]	[596..1]
gi\|148545649, gi... - gi\|82738180\|ref\|ZP_00901018.1\| acyl-CoA dehydrogenase, putative [Pseudomonas putida F1], gi\|82714787... gi\|26987110, gi\|... - gi\|26987110\|ref\|NP_742535.1\| acyl-CoA dehydrogenase domain-containing protein [Pseudomonas putida KT... tr\|E4RE02\|E4RE02... - Acyl-CoA dehydrogenase domain-containing protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_0...	520.0	[0..1]	[596..1]

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Predicted Domain #1

Region A:
Residues: [1-596]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVYQAPLRD YQFILDEMLH IYQQDALKGF DEIDPELVDA ILQGMADFST EVMLPLNSIG  60
   61 DVQGCKLVEG NVVTPEGFAD AYQQFVDNGW PTLTCDPAFG GQGLPEVVGI FVTEMQTSTN 120
  121 MAFAMYPGLT HGAYSAIHAH GSEALKQKYL PKLVSGEWTG TMNLTESHAG TDLALLRTKA 180
  181 VPAADGYFAI TGEKIFISSG DHPFTDNIVH LVLARLPDAP EGVKGISLFA VPKVLVNSDG 240
  241 SLGQANSLYA SGLEHKMGIH GNSTCVMVFD GALGELVGEP HQGLRAMFTM MNQARLGVGM 300
  301 QGLGVSEIAY QNALAYAKDR LQSRAISGAK APEKAADPIL VHGDVRRMLL SQKAFNEGAR 360
  361 ALVGQQALWL DEAERHSDPA KAKAASQLAA LFTPVVKGFI TNRGFNACVD AQQVFGGHGY 420
  421 IHEWGMEQFV RDSRIALIYE GTNGIQALDL VGRKLLSDRG AAMQQWSTLV TEFIQSQGKD 480
  481 AQMQPYVSGL MDCATDLQKA SGYLATHAAS NPDIIGAASM AYLELFGITA LAWMWARMAN 540
  541 IALTALDNGT EEVGFYQAKL KTADFYMAYW AVQSRSLRKQ LEQASEMLTQ LDETIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	2uxwA
Description:	No description for 2uxwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits