YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374299, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374299, gi|....

Description	E-value	Query Range	Subject Range
gi\|46133483 - gi\|46133483\|ref\|ZP_00157266.2\| COG0150: Phosphoribosylaminoimidazole (AIR) synthetase [Haemophilus i... gi\|145638957, gi... - gi\|145638957\|ref\|ZP_01794565.1\| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae PittII]... gi\|145629463, gi... - gi\|145629463\|ref\|ZP_01785261.1\| aspartate-semialdehyde dehydrogenase [Haemophilus influenzae 22.1-21...	360.0	[0..14]	[351..6]
gi\|53732741 - gi\|53732741\|ref\|ZP_00155002.2\| COG0150: Phosphoribosylaminoimidazole (AIR) synthetase [Haemophilus i...	358.0	[0..14]	[351..6]
PUR5_HAEI8 - Phosphoribosylformylglycinamidine cyclo-ligase OS=Haemophilus influenzae (strain 86-028NP) GN=purM P...	358.0	[0..14]	[351..6]
PUR5_HAEIN - Phosphoribosylformylglycinamidine cyclo-ligase OS=Haemophilus influenzae GN=purM PE=3 SV=1 PUR5_HAEIN - Phosphoribosylformylglycinamidine cyclo-ligase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11...	358.0	[0..14]	[351..6]
PUR5_MANSM - Phosphoribosylformylglycinamidine cyclo-ligase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=...	357.0	[0..10]	[351..2]
PUR5_ACTSZ - Phosphoribosylformylglycinamidine cyclo-ligase OS=Actinobacillus succinogenes (strain ATCC 55618 / 1...	356.0	[0..10]	[351..2]
gi\|91223510, gi\|... - gi\|91223510\|ref\|ZP_01258775.1\| phosphoribosylaminoimidazole synthetase [Vibrio alginolyticus 12G01],...	355.0	[0..13]	[351..7]
gi\|77974626 - gi\|77974626\|ref\|ZP_00830165.1\| COG0150: Phosphoribosylaminoimidazole (AIR) synthetase [Yersinia fred...	355.0	[0..7]	[351..25]
PUR5_HAES1 - Phosphoribosylformylglycinamidine cyclo-ligase OS=Haemophilus somnus (strain 129Pt) GN=purM PE=3 SV=...	354.0	[0..10]	[351..2]
PUR5_VIBF1 - Phosphoribosylformylglycinamidine cyclo-ligase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=pu...	353.0	[0..10]	[351..4]

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Predicted Domain #1

Region A:
Residues: [1-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPRGSSVST PTPLSYKDAG VDIDAGNALV NNIKAAVKRT RRPEVMGNLG GFGALCELPT  60
   61 KYKQPVLVSG TDGVGTKLRL AIDYKKHDTV GIDLVAMCVN DLIVQGAEPL FFLDYYATGK 120
  121 LDVETATAVV NGIGEGCFQS GCALIGGETA EMPGMYEGED YDLAGFCVGV VEKADIIDGS 180
  181 KVAAGDALIA LASSGPHSNG YSLVRKVLEV SQADPQQDLN GKPLIQHLLE PTKIYVKSLL 240
  241 KLIEASDVHA MAHITGGGFW ENIPRVLPEN CKAVIQGDSW QWPAVFSWLM ENGNIAEYEM 300
  301 YRTFNCGVGM IVALPADKVD AALALLAAEG EQAWLIGAIA AREGNEEQVE IL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.522879
Match:	1cliA
Description:	Aminoimidazole ribonucleotide synthetase (PurM) N-terminal domain; Aminoimidazole ribonucleotide synthetase (PurM) C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits