YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348829, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348829, gi|....

Description	E-value	Query Range	Subject Range
gi\|117920974, gi... - gi\|78688317\|ref\|ZP_00853022.1\| tolr protein [Shewanella sp. ANA-3], gi\|78503941\|gb\|EAP17529.1\| tolr ... gi\|82498710, gi\|... - gi\|82498710\|ref\|ZP_00884172.1\| tolr protein [Shewanella sp. MR-4], gi\|82403291\|gb\|EAP44050.1\| tolr p...	159.0	[0..1]	[144..1]
gi\|121998994, gi... - gi\|88949301\|ref\|ZP_01151919.1\| TolR protein [Halorhodospira halophila SL1], gi\|88927600\|gb\|EAR46562....	158.0	[0..4]	[141..8]
gi\|120599221, gi... - gi\|82744254\|ref\|ZP_00906834.1\| tolr protein [Shewanella sp. W3-18-1], gi\|82718384\|gb\|EAP53370.1\| tol... gi\|77808265, gi\|... - gi\|77816779\|ref\|ZP_00815933.1\| Biopolymer transport protein ExbD/TolR [Shewanella putrefaciens CN-32... gi\|124550361, gi... - gi\|124550361\|ref\|ZP_01708013.1\| Biopolymer transport protein ExbD/TolR [Shewanella putrefaciens 200]...	157.0	[0..1]	[144..1]
gi\|67519505, gi\|... - gi\|92113974\|ref\|YP_573902.1\| biopolymer transport protein ExbD/TolR [Chromohalobacter salexigens DSM...	155.0	[0..6]	[142..7]
gi\|83592428, gi\|... - gi\|83592428\|ref\|YP_426180.1\| biopolymer transport protein ExbD/TolR [Rhodospirillum rubrum ATCC 1117... gi\|48765099 - ref\|ZP_00269650.1\| COG0848: Biopolymer transport protein [Rhodospirillum rubrum]	153.0	[0..2]	[143..8]
gi\|126637749, gi... - gi\|78368712\|ref\|ZP_00838923.1\| Biopolymer transport protein ExbD/TolR [Shewanella sp. PV-4], gi\|7835...	152.0	[0..1]	[143..1]
gi\|30138255, gi\|... - gi\|30248369\|ref\|NP_840439.1\| biopolymer transport protein ExbD/TolR [Nitrosomonas europaea ATCC 1971...	152.0	[0..1]	[144..1]
gi\|114225800, gi... - gi\|78702214\|ref\|ZP_00866655.1\| biopolymer transport protein [Alkalilimnicola ehrlichei MLHE-1], gi\|7...	151.0	[0..5]	[143..9]
gi\|254436159, gi... - gi\|254436159\|ref\|ZP_05049666.1\| protein TolR [Nitrosococcus oceani AFC27], gi\|224409616\|ref\|YP_00262... gi\|77163681, gi\|... - gi\|77163681\|ref\|YP_342206.1\| biopolymer transport protein ExbD/TolR [Nitrosococcus oceani ATCC 19707... gi\|207089270 - gi\|207089270\|gb\|EDZ66542.1\| protein TolR [Nitrosococcus oceani AFC27]	151.0	[0..6]	[144..6]
gi\|113889376, gi... - gi\|114047934\|ref\|YP_738484.1\| biopolymer transport protein ExbD/TolR [Shewanella sp. MR-7], gi\|11388...	151.0	[0..1]	[144..1]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVGYQRKRR RPVAEINVVP YIDVMLVLLI IFMVTAPIVT QGVKVELPQG AAEVLPADSK  60
   61 PPVVASIDAD GAYFLNQGGS NNEEMELEEL ATAVAAIMVT EPQRPVVVKA DRTIPYDNVI 120
  121 QLMVTLQQAG VPSVGLMTDS PKEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	20.070581
Match:	PF02472.7
Description:	No description for PF02472.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.870	N/A	N/A	c.102.1	Cell-division inhibitor MinC, N-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits