YRC Public Data Repository - Protein Structure Prediction

Protein:	BIOC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOC_SHEON.

Description	E-value	Query Range	Subject Range
gi\|113885376, gi... - gi\|82498335\|ref\|ZP_00883838.1\| Biotin biosynthesis protein BioC [Shewanella sp. MR-4], gi\|82403672\|g...	176.0	[0..1]	[275..1]
gi\|114047921, gi... - gi\|78691552\|ref\|ZP_00856162.1\| Biotin biosynthesis protein BioC [Shewanella sp. MR-7], gi\|78509047\|g...	169.0	[0..1]	[275..1]
gi\|91189491, gi\|... - gi\|91226050\|ref\|ZP_01260977.1\| biotin synthesis protein BioC [Vibrio alginolyticus 12G01], gi\|911894...	168.0	[0..2]	[267..5]
gi\|90331572, gi\|... - gi\|90416819\|ref\|ZP_01224749.1\| probable biotin synthesis protein BioC [marine gamma proteobacterium ... gi\|90416819\|ref\|... - probable biotin synthesis protein BioC [marine gamma proteobacterium HTCC2207]	167.0	[0..20]	[270..280]
gi\|28806102, gi\|... - gi\|28897889\|ref\|NP_797494.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633], g... gi\|28806102 - gi\|28806102\|dbj\|BAC59378.1\| biotin synthesis protein BioC [Vibrio parahaemolyticus RIMD 2210633] gi\|149748333, gi... - gi\|153838278\|ref\|ZP_01990945.1\| biotin biosynthesis protein BioC [Vibrio parahaemolyticus AQ3810], g...	165.0	[0..15]	[267..13]
gi\|78364606, gi\|... - gi\|78486320\|ref\|YP_392245.1\| biotin biosynthesis protein BioC [Thiomicrospira crunogena XCL-2], gi\|7...	163.0	[0..20]	[269..8]
gi\|90324431, gi\|... - gi\|90414523\|ref\|ZP_01222498.1\| putative biotin synthesis protein BioC [Photobacterium profundum 3TCK...	162.0	[0..19]	[267..26]
gi\|227009175, gi... - gi\|227081287\|ref\|YP_002809838.1\| biotin synthesis protein BioC [Vibrio cholerae M66-2], gi\|227009175... gi\|11354439 - pir\|\|B82239 biotin synthesis protein BioC VC1114 [imported] - Vibrio cholerae (strain N16961 serogro... gi\|124119153, gi... - gi\|153222173\|ref\|ZP_01952967.1\| biotin synthesis protein BioC [Vibrio cholerae MAK 757], gi\|12411915... gi\|229370965, gi... - gi\|229608310\|ref\|YP_002878958.1\| biotin synthesis protein BioC [Vibrio cholerae MJ-1236], gi\|2293709... gi\|121726317, gi... - gi\|121726317\|ref\|ZP_01679607.1\| biotin synthesis protein BioC [Vibrio cholerae V52], gi\|121631263\|gb... gi\|229357514, gi... - gi\|229505291\|ref\|ZP_04394801.1\| biotin synthesis protein BioC [Vibrio cholerae BX 330286], gi\|229357... gi\|153823822, gi... - gi\|229511039\|ref\|ZP_04400518.1\| biotin synthesis protein BioC [Vibrio cholerae B33], gi\|229351004\|gb... gi\|153816920, gi... - gi\|153816920\|ref\|ZP_01969587.1\| biotin synthesis protein BioC [Vibrio cholerae NCTC 8457], gi\|126512... gi\|9655585, gi\|1... - gi\|9655585\|gb\|AAF94273.1\| biotin synthesis protein BioC [Vibrio cholerae O1 biovar El Tor str. N1696... gi\|227012929, gi... - gi\|227117479\|ref\|YP_002819375.1\| biotin synthesis protein BioC [Vibrio cholerae O395], gi\|227012929\|...	162.0	[0..1]	[270..46]
gi\|218321183, gi... - gi\|218708164\|ref\|YP_002415785.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio splen... gi\|85835662, gi\|... - gi\|86146605\|ref\|ZP_01064927.1\| ubiquinone/menaquinone biosynthesis methyltransferase [Vibrio sp. MED...	162.0	[0..13]	[236..30]
gi\|94501347, gi\|... - gi\|94501347\|ref\|ZP_01307867.1\| biotin synthesis protein BioC [Oceanobacter sp. RED65], gi\|94426460\|g...	162.0	[0..19]	[271..5]

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Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMPLGVSVN SHQSASQVEH IADRFSAAAK HYQEHNCLQR LSGASLLQGF VAKGAILDIG  60
   61 AGPGTDFANR AMGEEMRVYA LDIALGMLQQ LKTIYPEHQC VCGNAEQLPF VDRSIDCIYS 120
  121 NLALQWCHDF SAATSEMARV LKSGGEAHLS IVAAGSLAQL SNLGLRVNGF LSLESLQAAF 180
  181 DDTDWQFLDV KLMPMTVYFQ DLKALLYSIK GVGASVQSSV QTVTSSESDA HFGKLRGRHD 240
  241 WQALQQRAEQ FREAQGLPLT YQIAQFRVRR QGGSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.30103
Match:	2p35A
Description:	No description for 2p35A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits