YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348809, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348809, gi|....

Description	E-value	Query Range	Subject Range
gi\|196251628, gi... - gi\|196251628\|ref\|ZP_03150296.1\| Cobyrinic acid ac-diamide synthase [Clostridium thermocellum DSM 415... gi\|125974862, gi... - gi\|67874869\|ref\|ZP_00504449.1\| ATPase, ParA type [Clostridium thermocellum ATCC 27405], gi\|67850972\|...	163.0	[0..1]	[231..4]
gi\|146297750, gi... - gi\|82500912\|ref\|ZP_00886301.1\| ATPases involved in chromosome partitioning [Caldicellulosiruptor sac...	161.0	[0..1]	[218..4]
gi\|150019903, gi... - gi\|82748940\|ref\|ZP_00911413.1\| Spo0A activation inhibitor [Clostridium beijerincki NCIMB 8052], gi\|8...	158.0	[0..1]	[231..3]
gi\|183224099, gi... - gi\|89091501\|ref\|ZP_01164501.1\| chromosome partitioning protein, membrane-associated ATPase [Lactobac... gi\|227531696, gi... - gi\|227531696\|ref\|ZP_03961745.1\| chromosome partitioning protein, membrane-associated ATPase [Lactoba... gi\|227070512, gi... - gi\|227364419\|ref\|ZP_03848509.1\| chromosome partitioning protein, membrane-associated ATPase [Lactoba... gi\|227975128, gi... - gi\|227975128\|ref\|ZP_04023390.1\| chromosome partitioning protein, membrane-associated ATPase [Lactoba... gi\|227186190, gi... - gi\|227543813\|ref\|ZP_03973862.1\| chromosome partitioning protein, membrane-associated ATPase [Lactoba...	157.0	[0..1]	[229..4]
gi\|57239609, gi\|... - gi\|57239609\|ref\|YP_180745.1\| sporulation initiation inhibitor protein soj [Ehrlichia ruminantium str...	157.0	[0..1]	[218..4]
gi\|194454541, gi... - gi\|92090110\|ref\|ZP_01275013.1\| Cobyrinic acid a,c-diamide synthase [Lactobacillus reuteri 100-23], g...	157.0	[0..1]	[229..4]
gi\|227518145, gi... - gi\|227518145\|ref\|ZP_03948194.1\| chromosome partitioning ATPase [Enterococcus faecalis TX0104], gi\|22... gi\|29345208, gi\|... - gi\|29377740\|ref\|NP_816894.1\| ParaA family ATPase [Enterococcus faecalis V583], gi\|29345208\|gb\|AAO829... gi\|238830948, gi... - gi\|238856387\|ref\|ZP_04646656.1\| sporulation initiation inhibitor protein soj [Enterococcus faecalis ... gi\|229304168, gi... - gi\|229550735\|ref\|ZP_04439460.1\| chromosome partitioning ATPase [Enterococcus faecalis ATCC 29200], g... gi\|229307747, gi... - gi\|229547165\|ref\|ZP_04435890.1\| chromosome partitioning ATPase [Enterococcus faecalis TX1332], gi\|22... gi\|227175226, gi... - gi\|227555649\|ref\|ZP_03985696.1\| chromosome partitioning ATPase [Enterococcus faecalis HH22], gi\|2271...	157.0	[0..1]	[231..4]
gi\|106893737, gi... - gi\|158321886\|ref\|YP_001514393.1\| cobyrinic acid ac-diamide synthase [Alkaliphilus oremlandii OhILAs]...	157.0	[0..1]	[218..4]
gi\|68194822, gi\|... - gi\|69247497\|ref\|ZP_00604367.1\| Cobyrinic acid a,c-diamide synthase [Enterococcus faecium DO], gi\|681... gi\|48824601 - ref\|ZP_00285954.1\| COG1192: ATPases involved in chromosome partitioning [Enterococcus faecium]	157.0	[0..1]	[231..4]

Back

Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFVTGTDTD SGKTLVSTAL LTAFNRDVLR AGSSRLSLGV KPVASGCEIT EKGLRNSDAL  60
   61 KLMSASSLKL SYEQVNPISF EPAIAPHIAA KQQRVNLSPE AILAKLDRQA WAQADFCLIE 120
  121 GAGGWRLPLG EGRYLSELVQ QLNLPVILVV GMKLGCLNHA LLTQEAILAD GLTVAGWVAN 180
  181 CVDPNMSVFD ENLASLKEMM VSPFLGCIPH LKQADAEHAA NFMNIQPLLM K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1dtsA
Description:	CRYSTAL STRUCTURE OF AN ATP DEPENDENT CARBOXYLASE, DETHIOBIOTIN SYNTHASE, AT 1.65 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: