YRC Public Data Repository - Protein Structure Prediction

Protein:	DEOD3_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DEOD3_SHEON.

Description	E-value	Query Range	Subject Range
gi\|242258488, gi... - gi\|242258488\|ref\|ZP_04803284.1\| purine nucleoside phosphorylase [Thermoanaerobacter sp. X513], gi\|24... gi\|241902447, gi... - gi\|241902447\|ref\|ZP_04787181.1\| purine nucleoside phosphorylase [Thermoanaerobacter brockii subsp. f... DEOD_THEPX - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter sp. (strain X514) GN=deoD PE=3 SV=1 DEOD_THEP3 - Purine nucleoside phosphorylase DeoD-type OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 ...	241.0	[0..1]	[232..1]
DEOD_THETN - Purine nucleoside phosphorylase deoD-type OS=Thermoanaerobacter tengcongensis GN=deoD PE=3 SV=1 DEOD_CALS4 - Purine nucleoside phosphorylase DeoD-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...	240.0	[0..1]	[232..1]
gi\|7473748 - pir\|\|D75306 purine nucleoside phosphorylase - Deinococcus radiodurans (strain R1) gi\|15807160, gi\|... - gi\|6459967\|gb\|AAF11716.1\|AE002050_2 purine nucleoside phosphorylase [Deinococcus radiodurans R1], gi...	237.0	[0..1]	[233..67]
DEOD_XENNA - Purine nucleoside phosphorylase DeoD-type OS=Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 /... DEOD_XENNE - Purine nucleoside phosphorylase deoD-type OS=Xenorhabdus nematophilus GN=deoD PE=3 SV=1	235.0	[0..2]	[233..3]
gi\|77959706 - gi\|77959706\|ref\|ZP_00823723.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia bercovieri ATCC 43...	235.0	[0..2]	[233..3]
gi\|77973607 - gi\|77973607\|ref\|ZP_00829153.1\| COG0813: Purine-nucleoside phosphorylase [Yersinia frederiksenii ATCC...	235.0	[0..2]	[233..3]
gi\|168216787, gi... - gi\|182381112\|gb\|EDT78591.1\| purine nucleoside phosphorylase [Clostridium perfringens NCTC 8239], gi\|... gi\|170662200, gi... - gi\|170662200\|gb\|EDT14883.1\| purine nucleoside phosphorylase [Clostridium perfringens E str. JGS1987]... DEOD_CLOPS - Purine nucleoside phosphorylase DeoD-type OS=Clostridium perfringens (strain SM101 / Type A) GN=deoD... gi\|182626457, gi... - gi\|182626457\|ref\|ZP_02954209.1\| putative membrane protein [Clostridium perfringens D str. JGS1721], ... gi\|169347265, gi... - gi\|169347265\|ref\|ZP_02866204.1\| purine nucleoside phosphorylase [Clostridium perfringens C str. JGS1... gi\|18310380, gi\|... - gi\|18310380\|ref\|NP_562314.1\| purine nucleoside phosphorylase [Clostridium perfringens str. 13], gi\|1...	234.0	[0..1]	[233..1]
DEOD_PHOLL - Purine nucleoside phosphorylase deoD-type OS=Photorhabdus luminescens subsp. laumondii GN=deoD PE=3 ... DEOD_PHOLL - Purine nucleoside phosphorylase DeoD-type OS=Photorhabdus luminescens subsp. laumondii (strain DSM 1...	234.0	[0..2]	[233..3]
DEOD_PASMU - Purine nucleoside phosphorylase deoD-type OS=Pasteurella multocida GN=deoD PE=3 SV=1 DEOD_PASMU - Purine nucleoside phosphorylase DeoD-type OS=Pasteurella multocida (strain Pm70) GN=deoD PE=3 SV=1	234.0	[0..1]	[233..1]
gi\|168215258, gi... - gi\|170713345\|gb\|EDT25527.1\| purine nucleoside phosphorylase [Clostridium perfringens CPE str. F4969]... DEOD_CLOP1 - Purine nucleoside phosphorylase DeoD-type OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / ...	234.0	[0..1]	[233..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAHINAQPT DFAETVIMPG DPLRAKYIAE TYLTDAVEVT NVRNMLGYTG YYQGQRISVM  60
   61 GHGMGISSMV LYGHELINFF GVKRIIRIGS LGATQQHVEM RDVILAQAAG TDSPTNAKRS 120
  121 SGYHMATSAT FSLLHKAYTK ANEKGISVKV GNVFSGDLYY DPDEDMIPAL ERFGVLGIDM 180
  181 EVAGLYGLAH QQGIESLAIL TVSDHCLTGE ETTAQERQLS FNNMIELALE TALN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	1a69A
Description:	Purine nucleoside phosphorylase, PNP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
purine-nucleoside phosphorylase activity	3.68206997938506	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.66765825367784	bayes_pls_golite062009
catalytic activity	2.18268586151113	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.01261001022129	bayes_pls_golite062009
S-methyl-5-thioadenosine phosphorylase activity	1.6959166270803	bayes_pls_golite062009
transferase activity	1.42022417161912	bayes_pls_golite062009
nucleobase binding	1.33291775180025	bayes_pls_golite062009
nucleoside binding	1.11256863177576	bayes_pls_golite062009
purine binding	1.00226077276304	bayes_pls_golite062009
binding	0.192121943858605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: