YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374249, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374249, gi|....

Description	E-value	Query Range	Subject Range
gi\|148263312, gi... - gi\|88937813\|ref\|ZP_01143354.1\| nitroreductase family protein [Geobacter uraniumreducens Rf4], gi\|889...	172.0	[0..1]	[181..1]
gi\|78224031, gi\|... - gi\|78224031\|ref\|YP_385778.1\| nitroreductase [Geobacter metallireducens GS-15], gi\|78195286\|gb\|ABB330...	172.0	[0..1]	[181..1]
gi\|88951678, gi\|... - gi\|88951678\|ref\|ZP_01154155.1\| Nitroreductase [Methanosaeta thermophila PT], gi\|88929355\|gb\|EAR48305...	167.0	[0..1]	[179..1]
gi\|83590668, gi\|... - gi\|83590668\|ref\|YP_430677.1\| nitroreductase [Moorella thermoacetica ATCC 39073], gi\|83573582\|gb\|ABC2...	167.0	[0..1]	[182..1]
gi\|110600504, gi... - gi\|222054060\|ref\|YP_002536422.1\| nitroreductase [Geobacter sp. FRC-32], gi\|221563349\|gb\|ACM19321.1\| ...	163.0	[0..1]	[181..1]
gi\|114845237, gi... - gi\|167039852\|ref\|YP_001662837.1\| nitroreductase [Thermoanaerobacter sp. X514], gi\|166854092\|gb\|ABY92... gi\|242232222, gi... - gi\|242256267\|ref\|ZP_04801161.1\| nitroreductase [Thermoanaerobacter sp. X513], gi\|242232222\|gb\|EES345...	161.0	[0..1]	[181..1]
gi\|241885212, gi... - gi\|241902497\|ref\|ZP_04787231.1\| nitroreductase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi\|... gi\|76588082, gi\|... - gi\|76796578\|ref\|ZP_00778937.1\| Nitroreductase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765880...	161.0	[0..1]	[181..1]
gi\|20808224, gi\|... - gi\|20808224\|ref\|NP_623395.1\| nitroreductase [Thermoanaerobacter tengcongensis MB4], gi\|20516820\|gb\|A... gi\|20808224 - gi\|20808224\|ref\|NP_623395.1\| Nitroreductase [Thermoanaerobacter tengcongensis MB4]	158.0	[0..1]	[181..2]
gi\|194541372, gi... - gi\|75855076\|ref\|ZP_00762739.1\| COG0778: Nitroreductase [Vibrio sp. Ex25], gi\|254227315\|ref\|ZP_049207...	157.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIELLLTR QSTPRLTSPA PNERELKIIL DAAIRVPDHG ALAPWEFIIA TGKGLDTLAD  60
   61 IYVYAAKASG GDEDFIHKAK GMPMRAPMVI TVVAKTQQHP KVPVLEQQIA AGCATMAMQQ 120
  121 AAFALGLGAV WRTGDFAFDA NVNAALGLAP EDQIVGFLYV GTPAVAAPIK LQKDGSQYAR 180
  181 YL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1bkjA
Description:	Flavin reductase P (NADPH:FMN oxidoreductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.11149969304282	bayes_pls_golite062009
oxidoreductase activity	0.223640985940171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: