YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374241, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374241, gi|....

Description	E-value	Query Range	Subject Range
gi\|30065718, gi\|... - gi\|30065718\|ref\|NP_839863.1\| gpV [Yersinia phage L-413C], gi\|30025912\|gb\|AAP04451.1\| gpV [Bacterioph...	185.0	[0..11]	[214..7]
SPIKE_BPP2 - Spike protein OS=Enterobacteria phage P2 GN=V PE=1 SV=2	184.0	[0..11]	[214..7]
gi\|191169690, gi... - gi\|75226773\|ref\|ZP_00713714.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli B7...	183.0	[0..11]	[214..7]
gi\|157077835, gi... - gi\|75190000\|ref\|ZP_00703267.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli E24377A], gi... gi\|57904736 - gi\|57904736\|gb\|AAW58981.1\| gp45 [Cloning vector MuNXKan] BP45_BPMU - Baseplate puncturing device gp45 OS=Enterobacteria phage Mu GN=Mup45 PE=1 SV=1	182.0	[0..2]	[215..4]
gi\|188489979, gi... - gi\|75513913\|ref\|ZP_00736266.1\| COG4540: Phage P2 baseplate assembly protein gpV [Escherichia coli 53...	182.0	[0..11]	[214..7]
gi\|34495800, gi\|... - gi\|34495800\|ref\|NP_900015.1\| bacteriophage base plate protein [Chromobacterium violaceum ATCC 12472]...	181.0	[0..4]	[215..6]
gi\|168825506, gi... - gi\|32029067\|ref\|ZP_00132156.1\| COG4540: Phage P2 baseplate assembly protein gpV [Haemophilus somnus ...	179.0	[0..12]	[214..8]
gi\|75208218, gi\|... - gi\|75208218\|ref\|ZP_00708587.1\| COG4384: Mu-like prophage protein gp45 [Escherichia coli B171], gi\|19...	178.0	[0..7]	[215..1]
gi\|241909547, gi... - gi\|241909547\|ref\|ZP_04794077.1\| phage baseplate assembly protein V [Desulfovibrio vulgaris RCH1], gi... gi\|46450549, gi\|... - gi\|46581128\|ref\|YP_011936.1\| phage baseplate assembly protein V, putative [Desulfovibrio vulgaris su...	178.0	[0..5]	[212..7]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTETYINKL LAPIRRRITG MLTRAVVSGI VEDLQRQNLQ VKMHADESAD NIERFQNYGM  60
   61 SSYPPEGAEA IVAALGGALS GLVAIAVED

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.88
Match:	2p5zX
Description:	No description for 2p5zX was found.

Predicted Domain #2

Region A:
Residues: [90-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKFRPKGESG DVFLYHLEGH KIRLTKDGKI ILTAQDVIFE IENSFTISTT DVIFNASGSF  60
   61 TIISPETLID GPLHVTGDIS TDLGITAVNG ITSNSVITGS DLSANNISYL GHIHKDAENR 120
  121 PTTAPE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.481486
Match:	PF06890.3
Description:	No description for PF06890.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits