YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374240, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374240, gi|....

Description	E-value	Query Range	Subject Range
gi\|237706775, gi... - gi\|237706775\|ref\|ZP_04537256.1\| bacteriophage V tail protein [Escherichia sp. 3_2_53FAA], gi\|2268998... gi\|218366369, gi... - gi\|218559600\|ref\|YP_002392513.1\| Tail protein [Escherichia coli S88], gi\|218366369\|emb\|CAR04121.1\| T... gi\|91211969, gi\|... - gi\|91211969\|ref\|YP_541955.1\| bacteriophage V tail protein [Escherichia coli UTI89], gi\|91073543\|gb\|A... gi\|117624853, gi... - gi\|117624853\|ref\|YP_853766.1\| putative tail protein [Escherichia coli APEC O1], gi\|115513977\|gb\|ABJ0...	458.0	[0..1]	[356..1]
gi\|19549006, gi\|... - gi\|19549006\|ref\|NP_599048.1\| tail protein [Enterobacteria phage SfV], gi\|19483754\|gb\|AAL89425.1\| tai...	456.0	[0..1]	[356..1]
lcl\|NC_016856.1_... - [gene=STM14_2436] [protein=tail protein] [protein_id=YP_005237982.1] [location=complement(2100364..2... gi\|23379209, gi\|... - gi\|23505462\|ref\|NP_700391.1\| Tail protein [Salmonella phage ST64B], gi\|23379209\|gb\|AAL25896.1\| Sb18 ...	454.0	[0..1]	[357..1]
gi\|193064349, gi... - gi\|75257696\|ref\|ZP_00729187.1\| COG4379: Mu-like prophage tail protein gpP [Escherichia coli E22], gi...	453.0	[0..1]	[356..1]
gi\|110613859, gi... - gi\|110804311\|ref\|YP_687831.1\| tail protein [Shigella flexneri 5 str. 8401], gi\|110613859\|gb\|ABF02526...	452.0	[0..1]	[356..1]
gi\|18152380, gi\|... - gi\|18249913\|ref\|NP_543101.1\| putative tail protein [Enterobacteria phage phiP27], gi\|18152380\|emb\|CA...	452.0	[0..1]	[353..1]
gi\|194438124, gi... - gi\|83586489\|ref\|ZP_00925123.1\| COG4379: Mu-like prophage tail protein gpP [Escherichia coli 101-1], ...	449.0	[0..1]	[353..1]
gi\|26990568, gi\|... - gi\|26990568\|ref\|NP_745993.1\| phage tail protein, putative [Pseudomonas putida KT2440], gi\|24985549\|g...	448.0	[0..3]	[358..5]
gi\|73856642, gi\|... - gi\|74313165\|ref\|YP_311584.1\| putative tail protein [Shigella sonnei Ss046], gi\|73856642\|gb\|AAZ89349....	444.0	[0..1]	[353..1]
gi\|77381389, gi\|... - gi\|77457386\|ref\|YP_346891.1\| bacteriophage Mu P [Pseudomonas fluorescens Pf0-1], gi\|77381389\|gb\|ABA7...	432.0	[0..3]	[351..6]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEIVLKAG GKIYQGWTKI GITRSLEAMS GAFDLEMTYK FLGNDAQYKA FIEPIKQGQA  60
   61 CTVDIGGERV ITGYVDDWVP SYDESTITIS VSGRDKTADL VDCSIDYPSG QFNNQTLTQI 120
  121 ADIVCKPFGI KVIVNTDVGE PFQRIQIEQG ETPHELLARL AKQRGVLLTS DTFGNLVITR 180
  181 ASKTKAGVSL ILGDNVKAAR GRFSWRQRFS KFTIKAAGAA HGQWDSAGLP TVGGIKADVT 240
  241 DSEIGRYRPL IIVNEEVTTA EGAAKRGQWE RQRSIGKSNM AEYTVTGWRI PQTGKLWNIN 300
  301 TLVPVIDEIM GLDEEMLIAS ILFSEDDAGR LAVISVVRPD AMDIPAQIVK DTKLGGSTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	116.0
Match:	1wruA
Description:	Structure of central hub elucidated by X-ray analysis of gene product 44; baseplate component of bacteriophage Mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.179671106026	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: