YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348744, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348744, gi|....

Description	E-value	Query Range	Subject Range
gi\|57904723 - gi\|57904723\|gb\|AAW58968.1\| I protein [Cloning vector MuNXKan] PRO_BPMU - Protease I OS=Enterobacteria phage Mu GN=I PE=1 SV=2	306.0	[0..1]	[315..1]
gi\|75820271, gi\|... - gi\|75820271\|ref\|ZP_00750322.1\| COG4388: Mu-like prophage I protein [Vibrio cholerae V51], gi\|1162214...	306.0	[0..13]	[318..1]
gi\|188495046, gi... - gi\|75513090\|ref\|ZP_00735552.1\| COG4388: Mu-like prophage I protein [Escherichia coli 53638], gi\|1884...	306.0	[0..1]	[315..1]
gi\|25350716 - pir\|\|E91250 probable proteinase protein [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|13364449, gi\|... - gi\|15834227\|ref\|NP_313000.1\| putative protease protein [Escherichia coli O157:H7], gi\|13364449\|dbj\|B... gi\|13364449, gi\|... - gi\|15834227\|ref\|NP_313000.1\| putative protease protein [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|217325485, gi... - gi\|217325485\|ref\|ZP_03441569.1\| protein gp32 [Escherichia coli O157:H7 str. TW14588], gi\|217321706\|g... gi\|189368100, gi... - gi\|189368100\|gb\|EDU86516.1\| protein gp32 [Escherichia coli O157:H7 str. EC4501], gi\|168761519\|ref\|ZP...	304.0	[0..1]	[315..1]
gi\|11282045 - pir\|\|G81120 I protein, probable NMB1098 [imported] - Neisseria meningitidis (strain MC58 serogroup B... gi\|15676978, gi\|... - gi\|7226336\|gb\|AAF41489.1\| putative I protein [Neisseria meningitidis MC58], gi\|15676978\|ref\|NP_27412...	304.0	[0..4]	[312..7]
gi\|170718830, gi... - gi\|32029863\|ref\|ZP_00132817.1\| COG4388: Mu-like prophage I protein [Haemophilus somnus 2336], gi\|170...	303.0	[0..7]	[318..3]
VPI_HAEIN - Mu-like prophage FluMu I protein OS=Haemophilus influenzae GN=HI_1504 PE=3 SV=1 VPI_HAEIN - Mu-like prophage FluMu I protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / R...	302.0	[0..11]	[309..8]
gi\|194430090, gi... - gi\|75208649\|ref\|ZP_00708953.1\| COG4388: Mu-like prophage I protein [Escherichia coli B171], gi\|19443...	298.0	[0..1]	[315..1]
gi\|33151720, gi\|... - gi\|33151720\|ref\|NP_873073.1\| bacteriophage Mu I protein GP32 [Haemophilus ducreyi 35000HP], gi\|33147...	297.0	[0..8]	[313..16]
gi\|24372265, gi\|... - gi\|24372265\|ref\|NP_716307.1\| prophage MuSo1, protein Gp32, putative [Shewanella oneidensis MR-1], gi... SO0674 - prophage MuSo1 protein Gp32, putative	290.0	[0..20]	[310..33]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQVKALTALC FNMMALEANA PGIWLPMIPA GTFQGVDGRS WMNPNPDGII AAFTKKRPFD  60
   61 VEHATHIKAP KGEEAPASGW ITQVENRAGE IWGFVEWNAE GRELIEEKKY AFYSPAFAHD 120
  121 PDTGVIYSLE SAGLTNSPNL NVPALNR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.395	N/A	N/A	a.181.1	Antibiotic binding domain of TipA-like multidrug resistance regulators
View	Download	0.354	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.328	N/A	N/A	d.93.1	SH2 domain
View	Download	0.235	N/A	N/A	b.43.4	Riboflavin synthase domain-like
View	Download	0.221	N/A	N/A	a.4.12	TrpR-like

Predicted Domain #2

Region A:
Residues: [148-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEDDPMKLPK LLTDLLGLGE DATAEQAVVA INAIKQDKEI ALNSAKQVDL NLYVPTNTYQ  60
   61 LALNRAESAE AKLGEIAKAE IEALVQSGVD AGKVAPKDKE MYLGLCSTQA GIEQFKGFLG 120
  121 TAPVIATNAQ KKVPASKDAP ELAEHELSLC RKMGISKEEF LAAKQQMNVG AE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits