YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24374222, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24374222, gi|....

Description	E-value	Query Range	Subject Range
gi\|48696940, gi\|... - gi\|48696940\|ref\|YP_024703.1\| gp30 [Burkholderia phage BcepMu], gi\|44829503\|gb\|AAS47870.1\| gp30 [Burk... gi\|197295369, gi... - gi\|197295369\|ref\|YP_002153910.1\| phage Mu F virion morphogenesis protein [Burkholderia cenocepacia J...	343.0	[0..8]	[253..13]
gi\|75255743, gi\|... - gi\|75255743\|ref\|ZP_00727504.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	333.0	[0..7]	[253..13]
gi\|213610158 - gi\|213610158\|ref\|ZP_03369984.1\| hypothetical protein SentesTyp_06444 [Salmonella enterica subsp. ent... gi\|16760411 - gi\|16760411\|ref\|NP_456028.1\| hypothetical protein STY1617 [Salmonella enterica subsp. enterica serov... gi\|25512711, gi\|... - gi\|25512711\|pir\|\|AF0686 hypothetical protein STY1617 [imported] - Salmonella enterica subsp. enteric... gi\|29137453, gi\|... - gi\|29141825\|ref\|NP_805167.1\| hypothetical protein t1371 [Salmonella enterica subsp. enterica serovar... gi\|213648563 - gi\|213648563\|ref\|ZP_03378616.1\| hypothetical protein SentesTy_15524 [Salmonella enterica subsp. ente... gi\|213855900 - gi\|213855900\|ref\|ZP_03384140.1\| hypothetical protein SentesT_18445 [Salmonella enterica subsp. enter...	332.0	[0..7]	[253..13]
gi\|75228564, gi\|... - gi\|75228564\|ref\|ZP_00715198.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	331.0	[0..7]	[253..13]
gi\|85058815, gi\|... - gi\|85058815\|ref\|YP_454517.1\| hypothetical protein SG0837 [Sodalis glossinidius str. 'morsitans'], gi...	329.0	[0..7]	[253..13]
gi\|188488965, gi... - gi\|75512141\|ref\|ZP_00734713.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	327.0	[0..7]	[253..13]
gi\|37527314, gi\|... - gi\|37527314\|ref\|NP_930658.1\| hypothetical protein plu3440 [Photorhabdus luminescens subsp. laumondii...	324.0	[0..7]	[252..6]
gi\|34103449, gi\|... - gi\|34497593\|ref\|NP_901808.1\| hypothetical protein CV_2138 [Chromobacterium violaceum ATCC 12472], gi...	323.0	[0..8]	[253..12]
gi\|75208647, gi\|... - gi\|75208647\|ref\|ZP_00708951.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	322.0	[0..5]	[260..11]

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Predicted Domain #1

Region A:
Residues: [1-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKMADPLVP KEALEWFKSK GIKPGFDYRD VWKEEQANAF TVAKMLNADL LVEVKQLVED  60
   61 AIGQGQTFEQ FRDILKPLLV KSGWWGVQTM QDPLTDETKL VQLGSEGRIK TIYKTNMRTA 120
  121 RSAGQWERIQ RTKRTMPYLL YQLGPSEQHR IEHLKWNNTL LPADDPWWDV HMTPNGWGCK 180
  181 CWIRQVSQYE ADKLIAAGTV KTTVPASKNK QWVNRRTGEV EVLPEGIDPG WNYNPGKNRE 240
  241 KMLAADLALK ESRMRQTLAN GS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	16.387216
Match:	PF04233.5
Description:	No description for PF04233.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits