YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24348683, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24348683, gi|....

Description	E-value	Query Range	Subject Range
gi\|108875839, gi... - gi\|157118058\|ref\|XP_001658987.1\| aspartate ammonia lyase [Aedes aegypti], gi\|108875839\|gb\|EAT40064.1...	423.0	[0..2]	[447..46]
gi\|50736122, gi\|... - gi\|57530433\|ref\|NP_001006382.1\| fumarate hydratase [Gallus gallus], gi\|53130266\|emb\|CAG31462.1\| hypo...	421.0	[0..3]	[447..52]
gi\|31580769 - gi\|31580769\|gb\|AAP51177.1\| fumarase [Ascaris suum]	421.0	[0..3]	[447..12]
orf19.543, orf19... - orf19.543 CGDID:CAL0000200 Assembly 19, Contig19-10053 (135521, 136909) CDS, translated using codon ... gi\|46439213, gi\|... - gi\|68477226\|ref\|XP_717406.1\| hypothetical protein CaO19.543 [Candida albicans SC5314], gi\|68477045\|r... gi\|238879912 - gi\|238879912\|gb\|EEQ43550.1\| fumarate hydratase, mitochondrial precursor [Candida albicans WO-1]	419.0	[0..2]	[449..6]
gi\|19528365 - gi\|19528365\|gb\|AAL90297.1\| LD46083p [Drosophila melanogaster]	418.0	[0..2]	[447..38]
gi\|91084043 - gi\|91084043\|ref\|XP_967085.1\| PREDICTED: similar to AGAP001884-PA [Tribolium castaneum]	418.0	[0..3]	[447..41]
gi\|53692620, gi\|... - gi\|53692620\|ref\|ZP_00122557.2\| COG0114: Fumarase [Haemophilus somnus 129PT], gi\|113461245\|ref\|YP_719...	417.0	[0..3]	[446..8]
FUMC_PASMU - Fumarate hydratase class II OS=Pasteurella multocida GN=fumC PE=3 SV=1 FUMC_PASMU - Fumarate hydratase class II OS=Pasteurella multocida (strain Pm70) GN=fumC PE=3 SV=1	415.0	[0..3]	[446..8]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSALTAIS PVDGRYGSKT ASLRGIFSEF GLTKYRVQVE INWLKLLADC PEITEVPPLS  60
   61 ESAIALLDAI KDNFSEQDAL RVKAIESTTN HDVKAVEYFI KEKIAANVEL AAVGEFVHFA 120
  121 CTSEDINNLS HGLMLTEARE QVVLPYCNEL LSAIKKLAVE YRSVPLMSRT HGQPASPSTL 180
  181 GKEMANVAVR LERQIKQIAA VEIMGKINGA VGNYNAHISA YPEVNWHALS ERFVTSLGLH 240
  241 WNAYTTQIEP HDYIAELFDA IARFNTILLD FDRDVWGYIA LGHFKQRTIA GEIGSSTMPH 300
  301 KVNPIDFENS EGNLGIANAL MQHLAAKLPV SRWQRDLTDS TVLRNLGVGI AHSLIAYQAT 360
  361 LKGISKLQVN EEHLRAELDQ NWEVLAEPVQ TVMRRYGIEK PYEKLKELTR GKRIDAKQLA 420
  421 EFIDGLALPE DVKAELKKMT PANYIGRAEA FVDELN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2ptsA
Description:	No description for 2ptsA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits